Solanum lycopersicum mRNA Solyc05g009660.2.1

mRNA details  
Name
Solyc05g009660.2.1
Type
mRNA
Length
1,696
Organism
Solanum lycopersicum
Description
BZIP transcription factor (AHRD V1 **** Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1
Location(s)
SL2.50ch05:3852729..3858146
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0006355
Length
5418
Nb exon
11
Sifter term
  • GO:0005515
  • GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g009660.2.1 BZIP transcription factor (AHRD V1 **** Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1

ATGCAAGCTTTCAAAGAAGCAGCTGTTATTAATAATAATAATAATAGTAATAGTAATAGTAACTCTAGTATGTATTGCCACTCAAGTTATTACCTCAGAGGTGATGAAGATAGTAGACTTGCAGCACGCTTTGCTGATATTGGAGAACTTGAACAGTCTACAGGATTCACTCAAGATGATGCTGTTGATTTAAGTAGAAGTACTGTATATGGTGAAATGAGGCCAAACAATGTTGGTATTGTTTCTTGTAACAACAATAACTTACACTTTGGTGAACTTAATACGAGTATTGGTTCATCTGAGACAGGGGTGGAGACAGGGAGGTTTATGTTGCAGAAGGCACAAACAGGAATGGTGGGTGGTGGAGGAGGGGGTGGGGGTGTTGTAGGTGGTGGTGTGGCATTGGGAAATGTGCAGCATTTTGAGAATTGGGGTGATTCTGGTATTGCAGACCATAGCCAGCAGACTGACACTTCAACAGATGTTGATACTGATGAAAGAAACCATCAGGGCCAAGGTGTTCAGCATGGTGCATTAATAGCTGTGGACTCCATGGACCTGTCCAAAGTAAAGCTTGGAGACCAGAAGACACTTCGCAGGCTGGCTCAGAATCGAGAAGCTGCTAGGAAAAGCCGATTAAGGAAAAAAGCATATGTTCAACAGCTGGAGAATAGTAGGCTCAAACTGTCACAGTTAGAGCAAGAGTTAAAACGAGCCCGCCAACAGGGCATATTTATTGCTAATGGATATGCAGGAGATCAGAGTCTTTCTGCTGGTGGAAATGGGGCATTGGCATTTGACATGGATTATGCACGTTGGCTAGATGAACATCAACGACTTATCAGTGATCTCCGATCAGCTGTAAATTCTCACAGGGGCGATAATGAACTGCGTCATCTCGTTGATGGAGTAATGTCACATTATGACGAAAAATTCAAGCTAAAGAGTGTAGGTTTAAAAGCAGATGTTTTTCATATGCTGTCAGGCATGTGGAAGACTCCTGTAGAGAGGTGTTTCATGTGGTTAGGTGGATTTCGTTCTTCTGAGCTTCTCAAGATTCTTGGCAACCATCTTGAACCGTTTACAGAGCAGCAGCTCATAGGCATATGTAACTTGCAACAGTCTTCTCAGCAAGCCGAGGACGCGCTATCACAAGGTATGGAAGCCCTGCAACAATTACTCATTGATACACTTTCGTCTACGTCTCTCGGCCCTAGTGGCTCGGGAAATGTAGCCGACTATATGGGGCAAATGGCGATTGCAATGAACCAGCTTGCCACTCTTGAGAACTTCCTTTATCAGGCTGATCTTCTGCGACAACGTACTTTGCAACAATTGCATCGAATCTTGACTACTCGTCAAGCTGCTCGAGCCCTCCTTGTCATAAGTGATTACATGTCAAGGCTTCGAGCACTCAGCTCGTTGTGGTTAGCACGCCCCAAAGACCAACTCTAGTACGTCGTATTCATCTCTACAAGGTTCCTCCTTTTCGTAGTCATTTTCCTACACCTTTGAAATTGTGAAGATAAGTCATTATATAGTAAGTTCACAACTTTCAAAAGTCTTTCACTCGAAATCACACTATGACAGCATATAGTGTGATCTGTATACTATTATCTTAGCTTTAGCTATTTTCTTGTACTAGGTATGTCAGTTACCTATTTGAAGATAGTCCTTAGTAAAACGTTGGTCGTTG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g009660.2.1SL2.50ch05:3852969..3858146485-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g009660.2SL2.50ch05:3852729..38581465,418-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g009660.2.1.1SL2.50ch05:3858049..385814698-1
exonexon:Solyc05g009660.2.1.10SL2.50ch05:3853217..3853462246-n/a
exonexon:Solyc05g009660.2.1.11SL2.50ch05:3852729..3853122394-n/a
exonexon:Solyc05g009660.2.1.2SL2.50ch05:3857016..3857116101-2
exonexon:Solyc05g009660.2.1.3SL2.50ch05:3856813..385689886-n/a
exonexon:Solyc05g009660.2.1.4SL2.50ch05:3856497..3856721225-n/a
exonexon:Solyc05g009660.2.1.5SL2.50ch05:3855255..385533278-n/a
exonexon:Solyc05g009660.2.1.6SL2.50ch05:3855092..385515160-n/a
exonexon:Solyc05g009660.2.1.7SL2.50ch05:3854403..385448078-n/a
exonexon:Solyc05g009660.2.1.8SL2.50ch05:3854217..385427458-2
exonexon:Solyc05g009660.2.1.9SL2.50ch05:3853771..3854042272-n/a
intronintron:Solyc05g009660.2.1.10SL2.50ch05:3853463..3853770n/a-n/a
intronintron:Solyc05g009660.2.1.11SL2.50ch05:3853123..3853216n/a-n/a
intronintron:Solyc05g009660.2.1.2SL2.50ch05:3857117..3858048n/a-n/a
intronintron:Solyc05g009660.2.1.3SL2.50ch05:3856899..3857015n/a-n/a
intronintron:Solyc05g009660.2.1.4SL2.50ch05:3856722..3856812n/a-n/a
intronintron:Solyc05g009660.2.1.5SL2.50ch05:3855333..3856496n/a-n/a
intronintron:Solyc05g009660.2.1.6SL2.50ch05:3855152..3855254n/a-n/a
intronintron:Solyc05g009660.2.1.7SL2.50ch05:3854481..3855091n/a-n/a
intronintron:Solyc05g009660.2.1.8SL2.50ch05:3854275..3854402n/a-n/a
intronintron:Solyc05g009660.2.1.9SL2.50ch05:3854043..3854216n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17817067%2Fdetails feature 17817067
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)