Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc05g009190.2.1

mRNA details  
Name
Solyc05g009190.2.1
Type
mRNA
Length
2,191
Organism
Solanum lycopersicum
Description
Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia
Location(s)
SL2.50ch05:3328877..3333922
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005737
Length
5046
Nb exon
9
Sifter term
GO:0004817
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g009190.2.1 Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia

TAAGCAAATAAAGTTTTTCCCAAAATAAAGAGAGGAAAATAAAAGCTGAATAAAAGGAAAAAAGAAAAGTAACGCTTCTTATTATTCGATAGGCACAAATCTGAACGGCCGGAATTAGGGTTTTTGTAGTAAGAGGAGTAAATTGACTATCCGTTCCGGTCGATCGGAGAAATTTCTGAGTAATGGCGAACGAGAAGGTGGAATTTCAAGTGTACAATTCAATGACGAGACAGAAGGAAGTATTCATACCGAAGGAACCTGGCAAGGTCAAAATGTACGTTTGTGGCGTTACGAGTTACGATTACAGTCATATCGGCCATGCTCGTGCCTATGTCGCCTTCGACCTTCTCTACAGATATCTGAAATACTTGGGATATGAGGTTATGTATGTGCGCAACTTCACCGATGTAGACGACAAGATAATTCGTAGGGCTAATGAGCTTGGAGAAGATCCAACAGCTCTGAGTGGTCGATACTGCCAAGAGTTTCTAAAAGACATGGATGATCTCCAGTGCCTCCAACCGACTCATCAGCCACGTGTTACTGAGCACATGGAGCAGATTAAGGAAATGATAGCTAAGATTATGGCTAATGGCTGTGCATACACAATCAATGGAGATGTTTATTTCTCTGTTGATAGTTTTCCAGAGTATGGTCGATTGTCCGGACGAAAATTAGAAGATAATCGAGCTGGAGAACGAGTTGAAGTTGATTCAAGAAAGAAAAATCCTGCCGACTTTGCCTTGTGGAAGTCTGCAAAGCCTGGTGAACCAAGTTGGGAGAGCCCCTGGGGTCCTGGAAGACCAGGTTGGCATATAGAATGCAGTGCAATGAGTGCGCACTACCTGACACATTCCTTTGATATACATGGTGGTGGAATGGACTTGACTTTTCCTCACCATGAAAATGAGATTGCCCAGAGTTGCACTGCTTGCCGAGAGAGTAATATTAGCTACTGGATGCATAATGGTTTTGTGAACATAGATGATGAGAAAATGTCGAAATCATTGGGGAATTTCTTCACTATACGTGAGGTTACTCGATTGTACCATCCCCTTGCATTGAGGTACTTCTTGTTGGGGAATCACTACCGATCTCCGGTTAACTATTCAATATCACAGATAGAAATTGCTTCAGAATCTGTGTTCTACATTTATCAGACCTTACTAGATTCTGAAGAAACCTTGTCAGCTTTCCAACAAGGAACTGAAACTGCAAAAAATGCAAAGGGGCGTGTTACCCCTCAGGCCCAAGAATGCATCAATAAGCTGCGTAATGAGTTGAAGACAAAGCTCTCTGATGACTTGCATACACCTACAATTTTAAATGCTGCTCTTCAAGAAGCCCTTAAACAAATGAATAGTTGCTTGACCATACTGAAGAAAAAGCAGCAAAAGCAACAACACTTATCTGCATCTTTGTCCCTGACCGAGCTCTTGAAAGAAGTGAAGGCAGTATTGGATGTTCTTGGCTTGCTTGCTGGTTCAACTTCTGCTGAGGTTCTGCAGCAACTTAAACAGAGGGCATTGAAAAGGGCTGAGTTAACAGAGGAAGATGTTCTGCATGCAATAGAGGAAAGAGCACTAGCAAGGAAAAACAAAGATTTCGCTAGAAGCGATCAAATCAGAACTGATCTAGCTGCCAAGGGTATCTCTTTAATGGACATTACAGGGACGACCGAAACAGCTTGGAGGCCTTGTGTAAGATCCATACAAGAACAGCCTGCCGCCCCAGCTCAACCGAAAAAGTCTGCAGCAGCAGTACAAGAAAAGCCTGTTGCACCATCTCAACAAAAGCAGCCCTCTGCAGCACCACAACAAGAACAGCCCGCTGCTGCGCCAGCTCAACAAGATCATACTACGGTGCCACCTCAGTAGCCCTTCTCTGATTACTCGTATTGAATTTCATTTTTGGAGTTATTTGCATACTTAATTGAACTCTTAACTTGTGAACTAGAAATTTTATGGATGAGACGTACATGATACTATTTGTTGCGCTGGGCATGTAACTAAGATGAGCAGAATAATTCTCTTTACAAGAAAGAGCCTGAGGCTTAACGCCCACTTCCTATTACATTTCACGGCACATTTTTGCCTTGCCTTGGATTGAGCGATCCAATTGACATGTAAACTGTATCATTGTTGTACTGATAATACTTATGAATATACTGGCACAACCAGTTTTTGACTAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g009190.2.1SL2.50ch05:3329190..3333740565-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g009190.2SL2.50ch05:3328877..33339225,046-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g009190.2.1.1SL2.50ch05:3333568..3333922355-1
exonexon:Solyc05g009190.2.1.2SL2.50ch05:3332538..333260164-n/a
exonexon:Solyc05g009190.2.1.3SL2.50ch05:3332214..3332375162-n/a
exonexon:Solyc05g009190.2.1.4SL2.50ch05:3331329..3331499171-n/a
exonexon:Solyc05g009190.2.1.5SL2.50ch05:3330975..3331256282-n/a
exonexon:Solyc05g009190.2.1.6SL2.50ch05:3330770..3330895126-n/a
exonexon:Solyc05g009190.2.1.7SL2.50ch05:3330117..3330338222-n/a
exonexon:Solyc05g009190.2.1.8SL2.50ch05:3329917..3330033117-n/a
exonexon:Solyc05g009190.2.1.9SL2.50ch05:3328877..3329568692-n/a
intronintron:Solyc05g009190.2.1.2SL2.50ch05:3332602..3333567n/a-n/a
intronintron:Solyc05g009190.2.1.3SL2.50ch05:3332376..3332537n/a-n/a
intronintron:Solyc05g009190.2.1.4SL2.50ch05:3331500..3332213n/a-n/a
intronintron:Solyc05g009190.2.1.5SL2.50ch05:3331257..3331328n/a-n/a
intronintron:Solyc05g009190.2.1.6SL2.50ch05:3330896..3330974n/a-n/a
intronintron:Solyc05g009190.2.1.7SL2.50ch05:3330339..3330769n/a-n/a
intronintron:Solyc05g009190.2.1.8SL2.50ch05:3330034..3330116n/a-n/a
intronintron:Solyc05g009190.2.1.9SL2.50ch05:3329569..3329916n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17816620%2Fdetails feature 17816620
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)