Solanum lycopersicum mRNA Solyc05g006170.2.1

mRNA details  
Name
Solyc05g006170.2.1
Type
mRNA
Length
2,147
Organism
Solanum lycopersicum
Description
NACHT, LRR and PYD domains-containing protein 5 (AHRD V1 *--- NALP5_BOVIN); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype
Location(s)
SL2.50ch05:850717..856839
GFF source
ITAG_eugene
From BOGAS
1
Length
6123
Nb exon
18
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g006170.2.1 NACHT, LRR and PYD domains-containing protein 5 (AHRD V1 *--- NALP5_BOVIN); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype

CTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACGGTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAGGTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAACGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCTTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g006170.2.1SL2.50ch05:850971..856780611-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g006170.2SL2.50ch05:850717..8568396,123-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g006170.2.1.1SL2.50ch05:856739..856839101-n/a
exonexon:Solyc05g006170.2.1.10SL2.50ch05:852607..85268276-2
exonexon:Solyc05g006170.2.1.11SL2.50ch05:852379..852509131-n/a
exonexon:Solyc05g006170.2.1.12SL2.50ch05:852047..85210660-n/a
exonexon:Solyc05g006170.2.1.13SL2.50ch05:851837..85191175-n/a
exonexon:Solyc05g006170.2.1.14SL2.50ch05:851659..851763105-n/a
exonexon:Solyc05g006170.2.1.15SL2.50ch05:851486..85158196-n/a
exonexon:Solyc05g006170.2.1.16SL2.50ch05:851323..85140381-n/a
exonexon:Solyc05g006170.2.1.17SL2.50ch05:851135..851236102-n/a
exonexon:Solyc05g006170.2.1.18SL2.50ch05:850717..851040324-n/a
exonexon:Solyc05g006170.2.1.2SL2.50ch05:856363..856660298-2
exonexon:Solyc05g006170.2.1.3SL2.50ch05:854995..855204210-2
exonexon:Solyc05g006170.2.1.4SL2.50ch05:854473..85453159-n/a
exonexon:Solyc05g006170.2.1.5SL2.50ch05:854121..854258138-n/a
exonexon:Solyc05g006170.2.1.6SL2.50ch05:853832..85390675-n/a
exonexon:Solyc05g006170.2.1.7SL2.50ch05:853629..85371284-n/a
exonexon:Solyc05g006170.2.1.8SL2.50ch05:853474..85353562-1
exonexon:Solyc05g006170.2.1.9SL2.50ch05:853195..85326470-n/a
intronintron:Solyc05g006170.2.1.10SL2.50ch05:852683..853194n/a-n/a
intronintron:Solyc05g006170.2.1.11SL2.50ch05:852510..852606n/a-n/a
intronintron:Solyc05g006170.2.1.12SL2.50ch05:852107..852378n/a-n/a
intronintron:Solyc05g006170.2.1.13SL2.50ch05:851912..852046n/a-n/a
intronintron:Solyc05g006170.2.1.14SL2.50ch05:851764..851836n/a-n/a
intronintron:Solyc05g006170.2.1.15SL2.50ch05:851582..851658n/a-n/a
intronintron:Solyc05g006170.2.1.16SL2.50ch05:851404..851485n/a-n/a
intronintron:Solyc05g006170.2.1.17SL2.50ch05:851237..851322n/a-n/a
intronintron:Solyc05g006170.2.1.18SL2.50ch05:851041..851134n/a-n/a
intronintron:Solyc05g006170.2.1.2SL2.50ch05:856661..856738n/a-n/a
intronintron:Solyc05g006170.2.1.3SL2.50ch05:855205..856362n/a-n/a
intronintron:Solyc05g006170.2.1.4SL2.50ch05:854532..854994n/a-n/a
intronintron:Solyc05g006170.2.1.5SL2.50ch05:854259..854472n/a-n/a
intronintron:Solyc05g006170.2.1.6SL2.50ch05:853907..854120n/a-n/a
intronintron:Solyc05g006170.2.1.7SL2.50ch05:853713..853831n/a-n/a
intronintron:Solyc05g006170.2.1.8SL2.50ch05:853536..853628n/a-n/a
intronintron:Solyc05g006170.2.1.9SL2.50ch05:853265..853473n/a-n/a
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