Solanum lycopersicum mRNA Solyc04g074490.2.1

mRNA details  
Name
Solyc04g074490.2.1
Type
mRNA
Length
3,038
Organism
Solanum lycopersicum
Description
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (AHRD V1 *--- JMJD6_DANRE); contains Interpro domain(s) IPR013129 Transcription factor jumonji
Location(s)
SL2.50ch04:60482173..60493129
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Length
10957
Nb exon
16
Sifter term
GO:0016757
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc04g074490.2.1 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (AHRD V1 *--- JMJD6_DANRE); contains Interpro domain(s) IPR013129 Transcription factor jumonji

ATGCGACTAGAGTCATCCCCGATGGAAATTGACCAAATTGATCGGAGGCCGGCGGCTCTCGGAGACCTCCGCATTCTTCCTGACGAAATCCTCTGCTCTATACTGACTTATCTCACTCTTCGCGATGTCGCTCGACTTTCCTGTGTTAGCAGTGTGATGTATATATTATGCAACGAGGAGCCCCTATGGATGAGCTTATGCATTGATATTGCTGATCGTCAACTTCAGTATAAAGGCTCTTGGAAAAGAACAGCCCTGGATCAATTGAATGTGACTTTCGAAAATAAGGAATCCTGCCAGAAACCACTATACTTCAATGGATTCAACTCTTTATTCCTTTATCGTAGATTATACCGGTGTCATACATCATTGAATGGATTTTATTATGATTCCGGAAATGTTGAAAGAGCAAAGAACCTTTCTGTAGATGAGTTTCGTGATAAGTATGATGGACATAAACCGGTTTTAATTGGTGGATTGGCCGACACTTGGCCTGCAAGGACTACATGGACAACGGAGGAGCTTTTAAAAAATTATGGAGATACAGCATTTAAATTATCTCAAAGAAGTCGTCACAAAATTAGGATGAAACTGAAGGACTATGTGGCATATATGAAAGTTCAGCATGACGAGGATCCTCTTTACATTTTTGACGAGAAGTTTGGGGAAGCTGCACCAGAGTTGTTGAAGGAGTACACTGTTCCAAATATGTTCAAAGAGGACTTCTTTGATGTGCTGGACATGGACCAGCGACCTTCCTTCAGATGGCTCATTATGGGACCAGAGAGGTCTGGTGCCTCTTGGCATGTTGATCCATCCCTAACTAGTGCTTGGAATACACTTTTATATGGCCGTAAAAGGTGGGCATTATATCCCCCTGGAAGAGTACCTTTAGGAGTAACAGTGCATGTAAATGAAGAAGATGGTGATGTCAATATTGACAGTCCATCATCTTTGCAGTGGTGGCTGGACTTCTACCCTCTTCTTGCTGAGGAAGACAAACCAATAGAGTGCACTCAACTGCCTGGGGAGACAATATTTGTTCCAAGTGGATGGTGGCATTGCGTGCTAAATTTAGAGACTACTGTTGCTGTGACACAGAATTTTGTGAACTCCAAGAACTTTGAATTTGTGTGTCTGGATATGGCTCCTGGTTATAGACATAAAGGAGTAGTCCGTGCCGGGCTTCTTGCTTTAGATGACATCAGCATTGAGGATGTCAGGAAAAATATGTTGTCCTTAGAAAGTGGTTTGAGCTACTCTGACCTGTCAAGGAAAGATAAGAGGATCAGAGTTGACCAGCCTAGAAGTTCAGAAGATGGAAGTACTATAGATTGGGTCTCTAAAGGCATAAATTCGACAGAGGTGGAATTTTCTTATGACATAAATTTCCTAGCTATGTTTTTGGATAAAGAGCAAGATCACTACACTTCGTTATGGAGCTCAAGCAACTCCATAGGGCAGCGAGAAATGAGAGAGTGGTTATCAAAGCTCTGGGTTGAAAAACCAGAGACTAGAGACCTTATATGGAAGGGAGCCTGTCTGGCGCTGAATGCTGATAGATGGTATGCACGCGCGACGGAAATTTGTACCTTCCATGGGTTGCCGTTGCCTACAGATGATGAGAGGCTTCCTGTTGGAACAGGCAGCAATCCGGTTTATCTAGTTGGGGACAATGTTATAAAAATACTTGTTGAAGAGGGATTAGAAGTTTGTCTTCATTCTTTGGGCACTGAGCTCGAGTTTTACAGTTCACTCCAGAAAATGAACTCCCCTTTGAGGAATCACATTCCTAATGTTTTATCCAGTGGGATTCTCTATATTGAAAATGGCTTGTGTAAGGTTCAGTGTTGGGATGGCAAAGGAATTCCAGAGGTGATTGCTAATTTTAGACCCATTGTGGAACATGGGGAAGCTGATTATCCATTTGGCTTATGGAGTAAAAGGCAGCTTGATTATACAAAAGCCGGGATGTCATTAGCCGAACTAGTAAGCACTGGCAGTGGCACAACAATATGGCCATATGTCATAACACAGAGATGCAAAGGAAAAATATATGCTCAAATAAGAGATACCATCTCATGGGAAGACACTCTAAATTTGGCCTCGTTCCTGGGAGAACAAATGCGCAACCTTCATCTTGTGCCGTGCCCAGCTTTGAATGATTTAACGTTATTGGAAACCCAGCAGAAAGTAGTACCCACTGCTAATGGGAATCTCGAGGATCACGAGGACAAGATTTGTGTCCCTGCAGAGTGGAATTTATTCCTGAAAACTCTGAACAGAAAAAAGAAGGATGTTTGTGACCGCTTGACCAAATGGGGCGATCCAATTCCTAGAGAGCTGATTGAGAAAGTCGAGGAATACATCCCCGATGACCTCCAAAAGGTTGACATGGGAGTCAGATCTTGTACCTGGATACACTCCGATGTGATGGATGACAATATCCACATGGAACCGTGTTCCCTCCCTTCTCGCTCTGGAGGGACTACTGATGATCCCGAGTCAATTGACAATGTTTCTGCAAATGGATCTAATTTGAGTGAGCCTATACGTGCATGGAGACCTACTCATATACTCGATTTCAGTGGTCTATCTGTTGGGGACCCGATTGTTGACTTAATCCCAATACACCTGGATATCTTTAGAGGAGATCCGCATTTACTGAAGCAATTTCTGGATAGCTATCAACTTCCATTTATTAAAACAGGGGTGAATGCATCAGCTAAAAGCAATGGATTTCAGAGACTTTCTTACCGAGCCATGTGCTACTGTATTTTGCATGACGAAAACGTTCTGGGAGCTATTTTCAGTACTTGGAAGAAACTAAAGATGGCTAAATCATGGGAAGAAGTCGAGGAAGCTGTATGGGGAGATCTTAATAGTTACACAGGCTCCTGTTGAACTTTTATAATTTTTGTCTCTCAGTTTTATTGATGAATATTGAATAAGTCCAATCGCGTGTACAATAACATTTGTTTGATGTAATTTATTGATCTTTTCCCCTTTTTCCTAGTGATCATTCCTTCATAACTTTC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc04g074490.2.1SL2.50ch04:60482172..60492995968+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc04g074490.2SL2.50ch04:60482173..6049312910,957+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc04g074490.2.1.1SL2.50ch04:60482173..60482324152+n/a
exonexon:Solyc04g074490.2.1.10SL2.50ch04:60488557..6048863781+n/a
exonexon:Solyc04g074490.2.1.11SL2.50ch04:60488723..60489051329+n/a
exonexon:Solyc04g074490.2.1.12SL2.50ch04:60489160..60489414255+1
exonexon:Solyc04g074490.2.1.13SL2.50ch04:60490769..6049083567+1
exonexon:Solyc04g074490.2.1.14SL2.50ch04:60490995..60491208214+n/a
exonexon:Solyc04g074490.2.1.15SL2.50ch04:60492120..60492282163+2
exonexon:Solyc04g074490.2.1.16SL2.50ch04:60492857..60493129273+1
exonexon:Solyc04g074490.2.1.2SL2.50ch04:60483331..60483441111+1
exonexon:Solyc04g074490.2.1.3SL2.50ch04:60483545..6048360056+1
exonexon:Solyc04g074490.2.1.4SL2.50ch04:60483690..60483832143+2
exonexon:Solyc04g074490.2.1.5SL2.50ch04:60484921..60485118198+n/a
exonexon:Solyc04g074490.2.1.6SL2.50ch04:60485197..60485396200+n/a
exonexon:Solyc04g074490.2.1.7SL2.50ch04:60486269..60486368100+1
exonexon:Solyc04g074490.2.1.8SL2.50ch04:60486475..60487047573+n/a
exonexon:Solyc04g074490.2.1.9SL2.50ch04:60488147..60488269123+n/a
intronintron:Solyc04g074490.2.1.1SL2.50ch04:60482325..60483330n/a+n/a
intronintron:Solyc04g074490.2.1.10SL2.50ch04:60488638..60488722n/a+n/a
intronintron:Solyc04g074490.2.1.11SL2.50ch04:60489052..60489159n/a+n/a
intronintron:Solyc04g074490.2.1.12SL2.50ch04:60489415..60490768n/a+n/a
intronintron:Solyc04g074490.2.1.13SL2.50ch04:60490836..60490994n/a+n/a
intronintron:Solyc04g074490.2.1.14SL2.50ch04:60491209..60492119n/a+n/a
intronintron:Solyc04g074490.2.1.15SL2.50ch04:60492283..60492856n/a+n/a
intronintron:Solyc04g074490.2.1.2SL2.50ch04:60483442..60483544n/a+n/a
intronintron:Solyc04g074490.2.1.3SL2.50ch04:60483601..60483689n/a+n/a
intronintron:Solyc04g074490.2.1.4SL2.50ch04:60483833..60484920n/a+n/a
intronintron:Solyc04g074490.2.1.5SL2.50ch04:60485119..60485196n/a+n/a
intronintron:Solyc04g074490.2.1.6SL2.50ch04:60485397..60486268n/a+n/a
intronintron:Solyc04g074490.2.1.7SL2.50ch04:60486369..60486474n/a+n/a
intronintron:Solyc04g074490.2.1.8SL2.50ch04:60487048..60488146n/a+n/a
intronintron:Solyc04g074490.2.1.9SL2.50ch04:60488270..60488556n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17802937%2Fdetails feature 17802937
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