Notice: Due to a wide-spread power outage in the area, SGN was unavailable early on Sunday. We apologize for the inconvenience.

Solanum lycopersicum mRNA Solyc04g056270.2.1

mRNA details  
Name
Solyc04g056270.2.1
Type
mRNA
Length
3,554
Organism
Solanum lycopersicum
Description
Calmodulin-binding transcription activator 3 (AHRD V1 *--* Q0WW70_ARATH); contains Interpro domain(s) IPR005559 CG-1
Location(s)
SL2.50ch04:53923428..53933858
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005634
Length
10431
Nb exon
14
Sifter term
GO:0016563
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc04g056270.2.1 Calmodulin-binding transcription activator 3 (AHRD V1 *--* Q0WW70_ARATH); contains Interpro domain(s) IPR005559 CG-1

CCTTTTCCTCTTTTTTTCTACCGCTCCTTAACCCATATACACTTTACTCTCTCTCTCTCTCTGTTGCCCTCGTTTTCCCCCTTTTTCTTGCCAAAATCTTGAACTTGTTTTGACCAAATCCGGTTTTCAGAATCTTTTTCTTTCATTAATCCTAAACCTTTTTGATTAATTTACCAACCCCAAGTTCAATTTTTAACTGGAAGCTCAACTAGTGTTTTAGATCGGAGCTCGGTTAGTTCTTTTTGTATGGTTTTGGAGCTGGGTTCATGGCAGACAGTAGGCGTTATGGTCTGAATGCTCAATTAGATATTGAGCAGATACTTTTGGAAGCGCAGCATCGATGGCTACGCCCAGCTGAAATTTGTGAAATTCTTAAAAATTACCAGAAGTTTCGAATTGCTCCAGAGCCACCAAACAGGCCTCCAAGTGGTTCATTGTTCCTTTTTGATCGGAAGGTTTTACGGTATTTCCGCAAAGATGGCCATAGTTGGAGAAAGAAAAGAGATGGAAAGACTGTGAAGGAGGCTCATGAGAGGCTCAAGGCTGGAAGCATTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTCCAAAGACGCAGCTATTGGATGCTTGAAGAGGAAATGTCACATATTGTTCTTGTTCACTACCGGGAAGTAAAGGGTAACAGGACAAATTTTAGCCGTATCAGAGAACCTCAACAAGTTACTCCTGATTTGCAAGAAACTGATGAAGATGTACACAGCTCTGAGGTGGACAGTTCCGCGTCTGCAAAATTTTATCCAAATGATTACCAAGTGAACTCACAAGTCACTGACACAACTAGCTTCAGCAGTGCGCAGGCCTCAGAATATGAGGATGCCGAATCAGTGTACAATCAACATCCAACTTCTGGATTTCACTCATTCCTTGATGCTCAGCCAAGTGCTGGAGATGGACTTGCTGTACCTTATCATCCGATTCCCTTCTCAAATGATCAAGTACAGTTTGCAGGAAGTTCTGGTACGAGTTTCTCCTCAATCCCACCAGGAAATGGAAACACAAGCACAGCAAATACCTATGTACCCAGTAGGAACCTCGACTTCGCATCATGGGGGACCATTTCAGTTAATAATCCCGCTGCATATCAATCTCTCCATTTTCAGCCTTCTGGCCAATCAAGTGCAAATAATATGATGCATGAACAAGGAAACACTACAATGGGACAAATATGCTCAAATGACTTCACGAGGCAGGAACATGAGAACCACATTGATGGCCTGGGGAACTGGCAGACTTCTGAAGTTGATTCCTCATTTATATCCAAGTGGTCCATGGATCAGAAGTTGAATCCAGATTTGACATCTGGTCAGACCATTGGGTCTAGTGGTGTATATGGTGTAGAACATCACAATTCCTTGGAGGCTTCTCAGCTACTTCCTGCGCAGCAAGATAAACACCCAATCCAGAATGAACTTCAATCACAGCTATCAGATGCAAATATTGGAGGCTCTCTAAATGCTGATTTAGATCACAATCTAAGCTTAGGGGTCAAAACCGATTATTCAGCTTTAAAACAACCTTTGTTAGATGGCGTCTTGAAAAGAGAAGGTTTGAAGAAGCTTGATAGCTTTGACCGGTGGATAAGCAAGGAACTTGGAGATGTAAGTGAGTCGCATATGCAATCCAATTCTAGTTCCTACTGGGATAATGTTGGAGATGAAGATGGAGTCGGTAATTCCACAATTGCTTCCCAAGTGCAGTTAGACACCTATGTGCTAAGTCCTTCACTCGCGCAGGATCAAATCTTTAGCATTATTGATTTCTCACCAAACTGGGCATTTTCTGGGTCAGAAATTAAGGTCCTCATCACTGGAAGGTTTTTGAAGTCCCAGCAAGAAGTGGAGAACTGTAGTTGGGCATGCATGTTTGGTGAGTTGGAAGTTCCCGCAGAAGTAATAGCTGATGGTGTTCTTCGCTGCCATACTCCGGTTCAAAAGGCTGGAAGAGTTCCATTCTACATAACATGCTCCAATAGGTTGGCATGTAGTGAGGTGAGAGAATTTGAATTTCGGGTCACTGAAGAGAAAGTAAAAGACCAGCTCCTACAAAAGCTTCTAAAAGAGAAGTTGCATGTTTGGCTCCTTCAAAAGGTTGCTGAGGGTGGGAAAGGCCCTAACATACTGGATGAAGGTGGTCAAGGAGTTCTACATTTTGCAGCTGCTCTTGGTTATGACTGGGCTGTACCACCTACTATAGCTGCAGGCGTAAGCGTCAATTTCCGAGATGTGAATGGATGGACTGCACTCCATTGGGCAGCATCATATGGAAGAGAGCGGACAGTGGGTTTCCTTATCTCCTTAGGTGCAGCTACTGGAGCATTGACAGATCCTACTCCTAAACATCCTTCAGGCAGAACACCTGCTGATCTAGCTTCCAGCAATGGACATAAAGGAATTGCTGGTTACTTAGCAGAGTCTTCCTTGAGCTCCCACCTTTTTTCTCTTGAGTTGAAGGAAAAGAAGCAGGGTGAGAATGAACAAGCTTTTGGGGAAGCTGTTCAAACGGTTTCTGAAAGGACTGCTACACCAGCTTGGGATGGTGACTGGTCACATGGAGTCTCATTGAAGGATTCTCTTGCAGCTGTTCGTAATGCTACTCAAGCAGCTGCTCGTATTCATCAGGTCTTCAGGGTGCAGTCATTCCAGAGGAAGCAGCTAAAAGAATACGGTGGCAGTGAATTTGGACTATCAGATGAGCGTGCTCTCTCACTTCTCGCCATGAAGACAAATAGGGCTGGACAGCATGATGAGCCTCACGCTGCTGCTGTCCGTATACAAAATAAATTTCGCAGTTGGAAGGGAAGAAGAGATTTTCTTCTAATCCGCCAACGAATTATTAAAATTCAGGCTCATGTGAGAGGACACCAGGTAAGGAACAAATACAAAAACATAATATGGTCTGTGGGGATCTTAGAGAAGGTAATTTTGCGATGGAGGCGGAAAGGAAGTGGATTGCGTGGATTTAAACCAGAAGCACCTACTGAAGGAAGCAACATGCAAGATCAACCAGTGCAGGAGGATGACTATGATTTCTTAAAAGAAGGCAGAAAGCAAACTGAAGAAAGGTTGCAGAAGGCTCTGGAAAGGGTAAAGTCGATGGTTCAATACCCGGAGGCTAGGGACCAGTATAGGAGGCTGCTGAATGTTGTGTCCGACATGCAAGAACCCAATAGTACTGCAGCCAGCTACAACTCAGCGGAAGCAGTTGATTTCAATGATGATTTGATCGATCTTGGTGATTTATTGGATGATGATACTTTTATGCCTACAGCACCTTGAGTTCTGTGTTAATAATATACCATTTGTGGATTAGTATTTGTTATACATGGCTGTTAGAGTTGTTGTATACATAGGCTGCACTAACTAGTTTGTAAATGTGAAAATCAAAAATCCATTGTGCAGATTGACAAGAATTTGAGATTTAAAGGTAGTAAGATTATGGTATGTTTGATGTTTTCTTTTCGTTTTATATTGATAGTTTTGTAGCATTTACGGTATTTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc04g056270.2.1SL2.50ch04:53923649..539335921,022-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc04g056270.2SL2.50ch04:53923428..5393385810,431-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc04g056270.2.1.1SL2.50ch04:53933553..53933858306-2
exonexon:Solyc04g056270.2.1.10SL2.50ch04:53926351..53926573223-2
exonexon:Solyc04g056270.2.1.11SL2.50ch04:53925876..53926122247-1
exonexon:Solyc04g056270.2.1.12SL2.50ch04:53924997..53925573577-n/a
exonexon:Solyc04g056270.2.1.13SL2.50ch04:53924503..53924826324-n/a
exonexon:Solyc04g056270.2.1.14SL2.50ch04:53923428..53923757330-n/a
exonexon:Solyc04g056270.2.1.2SL2.50ch04:53933129..53933248120-2
exonexon:Solyc04g056270.2.1.3SL2.50ch04:53931994..53932109116-n/a
exonexon:Solyc04g056270.2.1.4SL2.50ch04:53931435..5393152389-1
exonexon:Solyc04g056270.2.1.5SL2.50ch04:53930264..5393030643-n/a
exonexon:Solyc04g056270.2.1.6SL2.50ch04:53929301..53929508208-2
exonexon:Solyc04g056270.2.1.7SL2.50ch04:53929042..53929143102-2
exonexon:Solyc04g056270.2.1.8SL2.50ch04:53928604..53928905302-n/a
exonexon:Solyc04g056270.2.1.9SL2.50ch04:53926741..53927307567-n/a
intronintron:Solyc04g056270.2.1.10SL2.50ch04:53926574..53926740n/a-n/a
intronintron:Solyc04g056270.2.1.11SL2.50ch04:53926123..53926350n/a-n/a
intronintron:Solyc04g056270.2.1.12SL2.50ch04:53925574..53925875n/a-n/a
intronintron:Solyc04g056270.2.1.13SL2.50ch04:53924827..53924996n/a-n/a
intronintron:Solyc04g056270.2.1.14SL2.50ch04:53923758..53924502n/a-n/a
intronintron:Solyc04g056270.2.1.2SL2.50ch04:53933249..53933552n/a-n/a
intronintron:Solyc04g056270.2.1.3SL2.50ch04:53932110..53933128n/a-n/a
intronintron:Solyc04g056270.2.1.4SL2.50ch04:53931524..53931993n/a-n/a
intronintron:Solyc04g056270.2.1.5SL2.50ch04:53930307..53931434n/a-n/a
intronintron:Solyc04g056270.2.1.6SL2.50ch04:53929509..53930263n/a-n/a
intronintron:Solyc04g056270.2.1.7SL2.50ch04:53929144..53929300n/a-n/a
intronintron:Solyc04g056270.2.1.8SL2.50ch04:53928906..53929041n/a-n/a
intronintron:Solyc04g056270.2.1.9SL2.50ch04:53927308..53928603n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17798505%2Fdetails feature 17798505
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)