Solanum lycopersicum mRNA Solyc03g118340.2.1

mRNA details  
Name
Solyc03g118340.2.1
Type
mRNA
Length
3,146
Organism
Solanum lycopersicum
Description
ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2
Location(s)
SL2.50ch03:67245569..67250466
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0017111
  • GO:0006289
  • GO:0019538
  • GO:0005524
Length
4898
Nb exon
9
Sifter term
GO:0004176
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g118340.2.1 ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2

ATGATGGCTAGAGCTTTAGTTCAGTCAACAAACATTCTACCTTCAGTTGCTGGTGAAAGGGCTGGACAATTCAATGGATCCCGGAAAGATCAAAGAACTGTTAGAATGCTATGTAATGTAAAATGTTGTTCCTCAAGGCTGAACAATTTTGCAGGACTGCGAGGGTGCAATGCATTAGATACACTACTAGTAAAATCTGGAGAAACTCTCCATTCGAAAGTGGCAGCTGCAACTTTTGTCAGACGGCCACGAGGGTGCCGATTTGTCCCAAAAGCAATGTTTGAGCGGTTCACCGAGAAAGCAATAAAAGTCATTATGCTTGCCCAAGAAGAGGCCAGACGACTAGGTCACAACTTTGTTGGGACAGAACAGATCCTGCTGGGTCTTATTGGTGAGGGAACTGGTATTGCTGCTAAGGTTCTTAAATCCATGGGAATTAATTTGAAAGATGCTCGTGTGGAAGTAGAGAAGATCATTGGCAGGGGTAGTGGATTTATTGCAGTGGAAATCCCTTTTACTCCTCGTGCAAAGCGTGTTCTAGAACTATCTCTGGAGGAAGCCCGCCAACTAGGGCATAATTACATTGGCTCCGAACACTTGTTACTTGGATTGTTGCGCGAAGGTGAAGGTGTGGCTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCACTAACATTCGCACACAGGTCATACGGATGGTTGGCGAGAGTAGTGAGGCTGTTGGTGCTAGTGTTGGAGGTGGAACTTCTGGCCTAAAGATGCCTACATTGGAGGAGTACGGCACCAATTTGACAAAGTTAGCTGAAGAGGGGAAACTAGATCCTGTAGTTGGAAGACAGGCTCAAATCGAGCGTGTTACTCAAATCTTGGGTCGCCGTACAAAAAACAACCCTTGCCTTATTGGAGAACCAGGTGTTGGAAAAACTGCTATTGCCGAAGGGCTAGCTCAAAGAATTGCTAATGGTGATGTCCCTGAAACAATAGAAGGAAAGAAGGTCATAACACTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGACTGAAGAAACTAATGGAGGAAATTAAACAAAGTGATGAAATAATACTGTTTATTGATGAAGTACACACATTGATTGGAGCTGGAGCTGCAGAGGGAGCAATTGATGCTGCAAACATCTTGAAACCTGCCCTGGCTAGAGGCGAGCTACAGTGTATTGGAGCCACAACCCTGGATGAGTACAGAAAGCACATTGAGAAAGACCCTGCACTAGAGAGAAGGTTCCAGCCAGTTAAAGTCCCTGAACCTTCTGTGGATGAAACCATACAGATCTTGAAAGGGCTTCGGGAGAGGTATGAGATTCATCACAAGCTCCATTACACTGATGAGGCAATAGAGGCCGCTGCCAAGCTTTCTCACCAGTACATCAGTGACCGCTTTCTGCCTGATAAAGCAATTGACTTGATTGATGAAGCTGGTTCCCGTGTTCGACTTCGTCATGCACAGCTCCCTGAGGAAGCAAGAGAGCTGGAAAAGGAGCTTCGCCAGATTACAAAGGAGAAAAATGAATCTGTCCGCGGTCAAGATTTTGAGAAGGCTGGGGAGTTGCGTGATAGAGAAATGGATCTTAAGGCACAAATCTCAGCCTTGATAGACAAAAACAAAGAGAAGAGCAAGGCAGAATCTGAGGCAGGAGATGCAGCAGGTCCCATAGTGACAGAGGCAGATATTCAGCACATTGTCTCTTCCTGGACCGGCATTCCTGTAGAGAAGGTCTCAACTGATGAATCTGATCGCCTCCTAAAAATGGAAGAAACACTTCATACCCGAGTCATTGGCCAGGATGAAGCAGTAAAAGCCATTAGTCGTGCTATCAGACGTGCCCGTGTTGGCCTCAAGAATCCCAACCGACCTATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGTTGGGAAGTCAGAACTGGCCAAGTCTTTAGCAACGTACTACTTTGGTTCTGAAGAAGCAATGATTCGGCTTGATATGAGTGAGTTTATGGAAAGACACACTGTGTCTAAACTCATCGGTTCACCCCCTGGGTATGTTGGTTACACTGAAGGTGGTCAATTAACTGAAGCTGTGAGGCGTCGACCTTACACTGTTGTGCTCTTTGACGAGATTGAGAAGGCTCATCCTGATGTCTTTAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAAGGCAGAACTGTCGACTTCAAGAATACACTCCTCATCATGACATCGAATGTTGGAAGCAGTGTGATAGAGAAAGGAGGTCGTCGTATAGGTTTTGATCTAGATTTTGACGAGAAGGATAGTAGTTACAACCGTATCAAGAGCTTGGTGACTGAGGAGTTGAAACAGTACTTCAGGCCAGAGTTTTTAAACAGATTAGATGAGATGATTGTATTCCGTCAGCTCACTAAGTTGGAGGTGAAGGAGATTGCCGATATCATGCTTAAGGAGGTCTTTGTGAGGTTGAAGAATAAGGAGATAGAACTCCAAGTGACAGAGAGGTTTAGAGATAGGGTAGTTGATGAAGGATATAACCCAAGCTATGGAGCTAGGCCATTGAGGAGAGCTATTATGAGACTGCTAGAGGATAGTATGGCCGAGAAGATGCTTGCAGGTGAGATCAAAGAAGGTGATTCAGTAATTGTGGATGTGGATTCAGATGGCAACGTCACCGTCCTCAATGGCACTAGTGGTGCTCCCTCAGATTCAGCTCCTGAGCCTATCCTTGTGTAGATCAATTCTTCATTTAGCTCTACAAATTTGTTCTTCGTAATGTTGCTTTTGGATGTCTTGGCTAAGCAACATGTGAGTAATTTTTTGGGTGACAGGCTGATATATTCTTCCAAGTTGACTAGGCAATCTCCTTCTCAAGGATAGCATTCAGGAATACACACTATATACTTAATTGGGTTTCATTAAAATTCTGTCAAAGGGATATGTAAAAGCATTTCTTCTAATTTTTGGTAGGTGATAGTTAGACTTTTTATCATCATTTTCAGTACGTTTTTCTTCTAATTTTTGGTAGGTGATGGTCAGACATTGTCATCATTTTCAGCATGTTTTTTCTGCTGTCTTGTTAATTTGGTTCATACCATAAC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g118340.2.1SL2.50ch03:67245933..67250466927-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g118340.2SL2.50ch03:67245569..672504664,898-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g118340.2.1.1SL2.50ch03:67249896..67250466571-2
exonexon:Solyc03g118340.2.1.2SL2.50ch03:67249677..67249792116-n/a
exonexon:Solyc03g118340.2.1.3SL2.50ch03:67249303..67249425123-n/a
exonexon:Solyc03g118340.2.1.4SL2.50ch03:67249034..67249219186-n/a
exonexon:Solyc03g118340.2.1.5SL2.50ch03:67248180..67248395216-n/a
exonexon:Solyc03g118340.2.1.6SL2.50ch03:67247784..67248001218-1
exonexon:Solyc03g118340.2.1.7SL2.50ch03:67247405..6724748076-n/a
exonexon:Solyc03g118340.2.1.8SL2.50ch03:67247233..6724732290-n/a
exonexon:Solyc03g118340.2.1.9SL2.50ch03:67245569..672471181,550-n/a
intronintron:Solyc03g118340.2.1.2SL2.50ch03:67249793..67249895n/a-n/a
intronintron:Solyc03g118340.2.1.3SL2.50ch03:67249426..67249676n/a-n/a
intronintron:Solyc03g118340.2.1.4SL2.50ch03:67249220..67249302n/a-n/a
intronintron:Solyc03g118340.2.1.5SL2.50ch03:67248396..67249033n/a-n/a
intronintron:Solyc03g118340.2.1.6SL2.50ch03:67248002..67248179n/a-n/a
intronintron:Solyc03g118340.2.1.7SL2.50ch03:67247481..67247783n/a-n/a
intronintron:Solyc03g118340.2.1.8SL2.50ch03:67247323..67247404n/a-n/a
intronintron:Solyc03g118340.2.1.9SL2.50ch03:67247119..67247232n/a-n/a
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Related viewsNone found
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