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Solanum lycopersicum mRNA Solyc03g118040.2.1

mRNA details  
Name
Solyc03g118040.2.1
Type
mRNA
Length
2,021
Organism
Solanum lycopersicum
Description
Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR018124 Calreticulin/calnexin, conserved site IPR001580 Calreticulin/calnexin
Location(s)
SL2.50ch03:67024632..67028115
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005783
  • GO:0005509
Length
3484
Nb exon
6
Sifter term
GO:0005509
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g118040.2.1 Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR018124 Calreticulin/calnexin, conserved site IPR001580 Calreticulin/calnexin

TTTCGTACTTTTTAGTTTCTAGAGTGTTCTTTATTTTCTCCTTGATCTATTCCTCCCTTAGTGGAAACACCGTTAGGGTTTTTCCAAATCCAGATCTCTGATACAGTTTCGAATATTATCTTCTTCGCATAGTCCACAACGGGTTATGGAAGAAACTAGAAGGAAGATCTGGGCGCAATATGCGTTCCTGTTATTGGCTTGTTGCTTTTTCTCTCAACTCTACGCTACTTCAGATGTGAAGTTCTACGAGTCATTTGACGAAGCATTTGATGGGCGATGGATCGTATCTGAGAAAGAGGACTATTCAGGTGTGTGGAAACATGCCAAGAGTGAGGGACATGATGATTATGGACTTCTTGTTAGTGAGAAGGCTAGGAAATACGCTATTGTCAAGGAGCTTGACAATGTTGTTGACCTCAAAGATGGAACTGTGGTTCTTCAATATGAGGTTCGCCTCCAGGATGGACTTGAATGTGGTGGTGCTTACATAAAATACCTCCGCCCCCAGGAAGCAGGGTGGACCGCAAAGGGTTTTGATAACGAGTCCCCCTACACAATAATGTTTGGACCTGATAAATGCGGAGCCACAAACAAGGTGCACTTCATTTTGAAACACAAGAACCCTAAGAGTGGAGAATACGTTGAGCACCACCTCAAGTTTCCTCCCTCTGTACCAGCTGACAAGCTAACTCATGTTTACACTGCTGTGTTGAAACCGGACAATGATGTTCTTATCTTGGTTGACGGAGAAGAAAAGAAGAAGGCTAACTTCCTCTCATCTGATGATTTTGAGCCACCACTTATTCCTGCTGTGACCATTCCAGACCCAGAAGACAAGAAGCCGGAGGACTGGGATGAGAGAGCCAAGATTCCAGACCCAGATGCTAAGAAACCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGATGAGGAAGCTGTAAAGCCCGAAGGATGGTTGGATGATGAGCCTGAGGATGTTGATGATCCTGAGGCTACCAAGCCTGAAGATTGGGATGATGAGGAGGATGGTGAATGGGAGGCTCCGAAGGTTGACAACCCAAAATGTGCAGAAGCTCCTGGTTGTGGGGAGTGGAAAAGACCAATGATCAGAAATCCAGTATACAAGGGAAAATGGCACGCTCCGCTTATTGACAACCCCAATTACAAGGGTATTTGGAAGCCAAGAGATATCCCAAATCCTGACTATTTTGAACTTGACAAACCCAACTTTGAGCCTATCGCAGCCATTGGCATTGAGATCTGGACAATGCAAGATGGCATATTGTTTGACAATATCTTGATTGCTAGTGATGAAGAAGTTGCAGAATCATACAGGAAGACTGCCTGGAAACCCAAGTTTGATGTAGAAAAGGAGAAACAGAAAGCTGAGGAAGAAGCAGAATCTGGTGGCCTCAAAGGATACCAGAAATTAGTATTTGACCTCCTCTACAAGGTAGCTGGTATCCCATTCTTGGGTGAACACAAGACCAAAGTATTGGATCTTCTCGAGAAAGCTGAGAAACAGCCCAATATCACAGTTGGTGTCGTTGTCTCAATTGTAGTGGTTGTCTTCTCAGTTCTATTGAAGCTCATTTTCGGTGGGAAGAAGCAGCAACCTGCTAGAGCTAGTGCCGAGACTGAGAAAACTGACGGAGCTGAAACCTCGACTTCCAATAGTCAAGCCGCTGAGGAGAAGGAAGAGCAGAGTGAGGATGCTGGTGCTGCTCCTCGTCGAAGGACTAGGCGCGACAATTAGGATGGGGAAAGGTTCTAGTGACCGCAGTCGGACTTATTTTAGATTTTTGATCTAGTAGTTGTTCCTGTTGTTTTGATATCTTTTTCCTCTTTTCTCAAATTCTTGATGATCAAGGCAAGCAAGTTTTTCCAGCGATGTTGCTTCCCCTCAAAACAAGCATGTATCACAGTATTGTATATGAGACAATTTTTATCTGGATGTTATCCTCTTTTATATCATAGATTTTTAAAGAAGCGATTATTCTTGTTTGCTTTCTTTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g118040.2.1SL2.50ch03:67024890..67027970539-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g118040.2SL2.50ch03:67024632..670281153,484-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g118040.2.1.1SL2.50ch03:67027878..67028115238-n/a
exonexon:Solyc03g118040.2.1.2SL2.50ch03:67027684..6702775370-2
exonexon:Solyc03g118040.2.1.3SL2.50ch03:67025499..670266221,124-n/a
exonexon:Solyc03g118040.2.1.4SL2.50ch03:67025336..6702540772-n/a
exonexon:Solyc03g118040.2.1.5SL2.50ch03:67025130..67025249120-n/a
exonexon:Solyc03g118040.2.1.6SL2.50ch03:67024632..67025028397-n/a
intronintron:Solyc03g118040.2.1.2SL2.50ch03:67027754..67027877n/a-n/a
intronintron:Solyc03g118040.2.1.3SL2.50ch03:67026623..67027683n/a-n/a
intronintron:Solyc03g118040.2.1.4SL2.50ch03:67025408..67025498n/a-n/a
intronintron:Solyc03g118040.2.1.5SL2.50ch03:67025250..67025335n/a-n/a
intronintron:Solyc03g118040.2.1.6SL2.50ch03:67025029..67025129n/a-n/a
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