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Solanum lycopersicum mRNA Solyc03g114780.2.1

mRNA details  
Name
Solyc03g114780.2.1
Type
mRNA
Length
3,687
Organism
Solanum lycopersicum
Description
Predicted ATP-dependent RNA helicase (AHRD V1 **** Q2U083_ASPOR); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch03:64667359..64681442
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
14084
Nb exon
27
Sifter term
GO:0004003
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g114780.2.1 Predicted ATP-dependent RNA helicase (AHRD V1 **** Q2U083_ASPOR); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

ATGGAAGAATCGGAGACGAGTATGGAAGTGCGTAGCTTAACGGGTGAATCCATTGTTCTCTCCATTTTGCCGGACAAAACCATTCAACAACTTAAGCAACTCCTCAAGAAAACATTCCAACCGGCTTCAATTTCCCCAAATTTTCACCTCTTTCTCAAGGGTGTCAAATTAGGTTTAGAGAGTAAGATAAGTGACCATTCAGTTGGGAGTGGGGAATTTCTTGTGCTTGTTCCTTATACAAAGAAAGACAGACAACAGAACGAGAAAACTGAGACACCTGCAAGTTCATCTGTCCCAGTTGGTGGCTCAACTCTGAAAGAAGCCGAGACAGCATGGTCTGACATGATGGAAGACTTGTCTTACTTGAGCAGCATATCTAGGAACGAAAATCAGGACGAAGTTCTTTTGGATGAAACACGTTATAGAGATTCTGATGGACAAAATTGCAGTGTTCCGATGAATTTTTCTTCACAGGTTAAGCGGAAGAGAAGCATCAAGGATGATAAGATGGAAGGACATGCAGATGAGCTAGTCCTTAGCATACTAAAATCATCTTCCAATGACATGGATGACGAGAAAGCTAAGATATTTGTTCAGGTTTTAGCGTCTATAAATTGTTTTACTGACCCAGATTCAGGCAACTGTTTGTGGGAGGAAGCCAACAGAAACGACAATGTATCTGATCCATGTTCGAGTGGTAGTGATTTGTGCAGGTGTCCGTCGTGGTTGAGGAGAATAAGAAAAATATTTTCTTTTTTAAACATCTATTCAGCATTTTTACAACTTCAGAAGGGACAAGTTACCTGTTCCAGTCTGAAGGGAGCACTTGATCGTCTCTGTCTGTTTGGATTTCTGGCTGGTGTCACAGACATCGAGCAACTTTCCCTATTTTGTCCTAAGGTTGTAAACATTGTTGATGATGATACCGTGGATAAAAATTTCAAGGATGGTATTATTGTTTTCAGAAACTCAACAACAAAGGGAGAACAGAGTGCAACTAAAAAAGGTGTAACCATATCAAATGTTCTCCGCTCAATGAAGAAAAGGGAGTATGCATTCCGAACAAGTCTTTTGAAGTTAGTCAAGTTGTTGAAGCGTCAAAATGGAAATGAGTTCTCTAAAATTTCCCTGGAAGATTTCATTACCTTTGTGAAGCAAGGTGGTATTGGTGCTACAGGCATTGAGACGAAACGAACAGGTTCTCATGCCTTTGAAGCACACTGTTGTGATACAAATCCTATGACACCTTTGGAAATGGTGGAGCATCTGAGAAAGGGGATTGGATCTGATGGACAGGTTGTTCATATTGAAAATATCACTGCCCGCAATGCCACCTATGTTGAGATCCCAAGTGTACTTTCAGAAAGCACAGTATTGGCATTGAAAAATATTGGAATTACCAGATTATACAGCCATCAGGCTGAGTCTATCCAGGCTTCTCTTGCGGGAAAAGATGTTGTTGTAGCTACCTTGACATCCAGTGGGAAATCTCTTTGCTACAATGTGCCAGTTCTGGAAGTATTATCGCACAGTTTGTCAGCATGTGCTCTATACCTCTTCCCTACAAAGGCTTTGGCACAAGATCAACTAAGGTCTTTATTAAACATGACCAACGAGTTTAGTGCTGACCTCGGAATTGGTGTATATGATGGGGACACTTCTCAGATGGATAGGAAGTGGCTGCGTGATAATGCTAGACTGTTGATCACAAATCCTGATATGTTGCATGTCTCAATCTTGCCATGTCATAGACAATTCAGTCGAATTTTATCAAATCTTAGGTTTGTCGTTGTTGATGAAGCTCATTCGTATAAGGGGGCATTTGGATGTCATACTGCCCTTATTTTGAGGAGACTTCACCGACTTTGTTCTCATGTGTATGACAGTAATCCTTCATTTATATTTTCTACTGCAACTTCTGGAAATCCTGTGGAGCACTCAAAGGAGCTCTCAAATCTACCAACAATAGAGTTGATTCAGAATGATGGTAGTCCATCTGGCTCAAAGCTTTTTGTGTTATGGAATCCTCCTCTGCGCCTGAAAAAGATCTCAAAGAGAATTAAGACTGGCATTGATGATGGCTCTGTTGACAAGCATCTGATTGCTAGAAGATCAAGTCCCATTTTGGAGGTTTCTTGCCTTTTTGCAGAAATGATGCAGCATGGTCTTCGTTGTATTGCATTTTGTAAAACACGCAAACTTTGTGAGCTTGTCTTATGTTACACGCGTGAGATTCTTCAGGAAACAGCACCTCATTTAGTTGATACTATATGCGCTTACCGAGCTGGTTATATTGCTGAGGATCGAAGAAGAATTGAGCATGACTTTTTCAATGGTAATATATGCGGTATTGCTGCTACAAATGCTCTTGAATTGGGTATTGATGTTGGACATATTGATGCCACCCTACATCTAGGCTTTCCAGGCAGTATAGCTAGTCTGTGGCAACAAGCAGGAAGGTCAGGCAGACGGGGAAATGCATCACTTGCTATTTATGTTGCCTTTGAAGGACCTTTGGATCAATATTTCATGAAATTCCCTCAGAAACTTTTCAGGGGCCCAATTGAATGTTGTCATATAGATGCAAGAAACCGGCAGGTTCTTGAACAGCATCTGGCTGCTGCTGCTTTTGAATATCCATTGAGCTTGTCTGATGATGAGAAATACTTTGGCCCTGGCTTGGAGAGCATCATAATGGCACTTAAAAACAAGGGAATCCTGAGTACAGATATATCACGTAGTGCTACAGCTAGAATATGGAGCTACATTGGGTTGGAGAAGATGCCCTCAAGTGCCATTAGCATTCGAGCCATAGAAACTGAGCGGTACCAAGTGATTGACATTCAAAAGAATGAACTCCTGGAAGAAATTGAAGAAAGCAAGGCTTTTTTTCAGGTATATGAAGGGGCTAATTATATGAATCAGGGGAAAACGTATCTTGTGAAGGAGCTTGATGTGACAAACAGAATTGCTTGGTGCCAACGAGCGGACTTGAAATATTATACCAAAACACGTGACTACACTGATGTCGAAGTTACTGGTGCCAACTTTGCTTACCCAGCAAGGACTACTAGTCTGCAACTTCCAAGAACAACTGCCCAAGCACAAAGTTGCAGAGTAACGACCACGTGGTTTGGTTTCCGCAAAATATGGAAAAAGAGCAACCAAGTCTTTGACACTGTTGAACTTTCACTTCCTAATTACACATATGAAACCCAGGCTGTCTGGATTCAAGTTCCTCAGACCATAAAGACAGCTGTAGAGACCTTAAATTATTCATTCCGAGGAGGCTTACATGCTGCTGGTCATGCTCTTCTTAATGTTGTTCCTATGTACATAGTTTGCAATTCATCTGATTTAGCCTCAGAGTGTGTAAACCCTTATGATTCCCGCAATGTTCCAGAAAGAGTTCTGCTTTATGATCCACACCCTGGAGGGACTGGCATTTCAGCACAGATGCAGCATATATTCAGTGAGCTGCTGACTGCTGCTTTGGAACTTCTTGCATCATGTTGTTGCTCTGGTGATACCGGCTGTCCTAACTGTGTACAAAATATTTCCTGTCACGAGTACAATGAGGTTTTGCACAAGGATGCTGCCATAATGATAATCAAGGGTGTAATAGAGGAAGAAGAATCCTACTTCAAGAGTATATCAGAGTTGTCTTAAGTGTTTGAAGTGGAGCTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g114780.2.1SL2.50ch03:64667358..646814241,223+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g114780.2SL2.50ch03:64667359..6468144214,084+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g114780.2.1.1SL2.50ch03:64667359..64667517159+n/a
exonexon:Solyc03g114780.2.1.10SL2.50ch03:64672606..6467268580+n/a
exonexon:Solyc03g114780.2.1.11SL2.50ch03:64672851..6467294595+1
exonexon:Solyc03g114780.2.1.12SL2.50ch03:64673053..6467312068+2
exonexon:Solyc03g114780.2.1.13SL2.50ch03:64673789..64673890102+n/a
exonexon:Solyc03g114780.2.1.14SL2.50ch03:64673965..6467403571+n/a
exonexon:Solyc03g114780.2.1.15SL2.50ch03:64675349..64675456108+1
exonexon:Solyc03g114780.2.1.16SL2.50ch03:64675548..6467562376+1
exonexon:Solyc03g114780.2.1.17SL2.50ch03:64676620..64676756137+n/a
exonexon:Solyc03g114780.2.1.18SL2.50ch03:64676833..64676992160+1
exonexon:Solyc03g114780.2.1.19SL2.50ch03:64677106..64677285180+n/a
exonexon:Solyc03g114780.2.1.2SL2.50ch03:64667992..64668732741+n/a
exonexon:Solyc03g114780.2.1.20SL2.50ch03:64677375..64677491117+n/a
exonexon:Solyc03g114780.2.1.21SL2.50ch03:64677764..64677919156+n/a
exonexon:Solyc03g114780.2.1.22SL2.50ch03:64679309..64679476168+n/a
exonexon:Solyc03g114780.2.1.23SL2.50ch03:64679585..64679697113+n/a
exonexon:Solyc03g114780.2.1.24SL2.50ch03:64679805..64679928124+1
exonexon:Solyc03g114780.2.1.25SL2.50ch03:64681038..6468113396+n/a
exonexon:Solyc03g114780.2.1.26SL2.50ch03:64681220..6468128263+n/a
exonexon:Solyc03g114780.2.1.27SL2.50ch03:64681371..6468144272+n/a
exonexon:Solyc03g114780.2.1.3SL2.50ch03:64669461..6466955797+n/a
exonexon:Solyc03g114780.2.1.4SL2.50ch03:64669647..6466974498+2
exonexon:Solyc03g114780.2.1.5SL2.50ch03:64670692..64670823132+n/a
exonexon:Solyc03g114780.2.1.6SL2.50ch03:64671469..6467153769+n/a
exonexon:Solyc03g114780.2.1.7SL2.50ch03:64671791..64671913123+n/a
exonexon:Solyc03g114780.2.1.8SL2.50ch03:64671995..64672144150+n/a
exonexon:Solyc03g114780.2.1.9SL2.50ch03:64672344..64672475132+n/a
intronintron:Solyc03g114780.2.1.1SL2.50ch03:64667518..64667991n/a+n/a
intronintron:Solyc03g114780.2.1.10SL2.50ch03:64672686..64672850n/a+n/a
intronintron:Solyc03g114780.2.1.11SL2.50ch03:64672946..64673052n/a+n/a
intronintron:Solyc03g114780.2.1.12SL2.50ch03:64673121..64673788n/a+n/a
intronintron:Solyc03g114780.2.1.13SL2.50ch03:64673891..64673964n/a+n/a
intronintron:Solyc03g114780.2.1.14SL2.50ch03:64674036..64675348n/a+n/a
intronintron:Solyc03g114780.2.1.15SL2.50ch03:64675457..64675547n/a+n/a
intronintron:Solyc03g114780.2.1.16SL2.50ch03:64675624..64676619n/a+n/a
intronintron:Solyc03g114780.2.1.17SL2.50ch03:64676757..64676832n/a+n/a
intronintron:Solyc03g114780.2.1.18SL2.50ch03:64676993..64677105n/a+n/a
intronintron:Solyc03g114780.2.1.19SL2.50ch03:64677286..64677374n/a+n/a
intronintron:Solyc03g114780.2.1.2SL2.50ch03:64668733..64669460n/a+n/a
intronintron:Solyc03g114780.2.1.20SL2.50ch03:64677492..64677763n/a+n/a
intronintron:Solyc03g114780.2.1.21SL2.50ch03:64677920..64679308n/a+n/a
intronintron:Solyc03g114780.2.1.22SL2.50ch03:64679477..64679584n/a+n/a
intronintron:Solyc03g114780.2.1.23SL2.50ch03:64679698..64679804n/a+n/a
intronintron:Solyc03g114780.2.1.24SL2.50ch03:64679929..64681037n/a+n/a
intronintron:Solyc03g114780.2.1.25SL2.50ch03:64681134..64681219n/a+n/a
intronintron:Solyc03g114780.2.1.26SL2.50ch03:64681283..64681370n/a+n/a
intronintron:Solyc03g114780.2.1.3SL2.50ch03:64669558..64669646n/a+n/a
intronintron:Solyc03g114780.2.1.4SL2.50ch03:64669745..64670691n/a+n/a
intronintron:Solyc03g114780.2.1.5SL2.50ch03:64670824..64671468n/a+n/a
intronintron:Solyc03g114780.2.1.6SL2.50ch03:64671538..64671790n/a+n/a
intronintron:Solyc03g114780.2.1.7SL2.50ch03:64671914..64671994n/a+n/a
intronintron:Solyc03g114780.2.1.8SL2.50ch03:64672145..64672343n/a+n/a
intronintron:Solyc03g114780.2.1.9SL2.50ch03:64672476..64672605n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17772937%2Fdetails feature 17772937
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