Solanum lycopersicum mRNA Solyc03g113800.2.1
 mRNA details
|
| Name | Type |
Length
1,933
|
Organism |
|
Description
Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase
|
|
Location(s)
SL2.50ch03:63841737..63849393
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0055114
- Length
- 7657
- Nb exon
- 15
- Sifter term
- GO:0004029
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g113800.2.1 Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase
TAGTTTTTTCTCGAGTGTACATGCGCGTGTGGATGCAAGCGAGTGGTCGGATTATATGACGGTGTTATCAAATTCTTTGGCTATAAAGTAGGAATGAGCACTACATTTTTTCGACTGATATCAGTAACACTTTGACAAAATACTGAAAGTGAAGTGATCAAGTGTAGAGCCATGGCGATTCCTAATATACGGATCCCTTGTCGGCAGTTGTTCATCGACGGTGAATGGAGAGAACCCCTCAAGAAGAACCGATTACCCATCATCAATCCGGCCAATGAAGAAATTATCGGGTATATTCCCGCAGCTACAGAGGAGGATGTAGATATGGCCGTCAAAGCTGCACGGAGTGCGCTTCGTCGAGATGACTGGGGTTCTACTACTGGAGCACAGCGTGCCAAATATCTTCGTGCTATTGCTGCTAAGGTACTGGAGAAAAAGCCTGAACTGGCTACACTTGAGACTATCGATAATGGAAAACCCTGGTTCGAGGCTGCCTCGGATATAGATGATGTCGTAGCGTGTTTTGAGTACTATGCAGATCTAGCTGAAGCTTTGGATTCAAAAAAGCAGACTGAAGTTAAACTTCATTTGGATTCATTCAAGACCCATGTTTTAAGAGAACCTCTTGGTGTTGTGGGGTTGATTACTCCATGGAATTATCCTCTTTTGATGACCACATGGAAAGTCGCTCCTGCCCTAGCAGCTGGTTGTGCAGCAATACTCAAGCCATCAGAACTAGCATCTATTACCTCTTTGGAGTTGGGTGAAATCTGTAGAGAGGTGGGTCTTCCTCCTGGTGCCCTTAGCATACTAACGGGATTAGGACATGAAGCTGGTTCTCCTTTGGTATCACATCCTGATGTTGATAAGATTGCATTTACAGGAAGTGGCCCAACAGGGGTCAAGATCATGACCGCTGCAGCTCAACTTGTTAAACCAGTTACTCTTGAGCTTGGTGGAAAAAGTCCAATAGTTGTGTTTGATGACATTCATAACCTTGATACAGCTGTGGAGTGGACTCTTTTTGGCTGCTTTTGGACAAATGGTCAAATTTGCAGTGCAACTTCACGTCTTATAATACAGGAAACAATTGCTCCACAATTTTTGGCCAGGCTTCTTGAGTGGACAAAAAACATCAAAATCTCAGATCCCTTGGAAGAAGACTGCAAGCTTGGTCCTGTCATTAGTCGTGGACAGTATGAGAAGATCTTGAAGTTCATCTCTACAGCCAAAGATGAAGGTGCAACCATTCTTTATGGTGGTGACCGACCTGAGCACTTAAAGAAAGGATATTACATTCAACCAACAATCATAACTGATGTTGATACGTCCATGGAGATCTGGAAAGAGGAGGTATTTGGACCTGTTCTTTGTGTCAAAACATTTAAAATTGAAGAGGAAGCCATTGAACTAGCAAATGATACCAAGTTTGGTTTGGGTGCTGCTATTTTGTCAAAAGATCTTGAAAGATGTGAACGTTTCACAAAGGCTTTTCAGTCGGGGATTGTCTGGATCAACTGCTCGCAGCCATGCTTTTGGCAACCACCATGGGGGGGTAAGAAGCGTAGTGGTTTTGGACGTGAGCTTGGGGAATGGAGTCTCGAGAACTACCTAAACATTAAACAGGTGACTCAGTATGTGACTCCGGACGAACCATGGGCTTTTTACAAGTCTCCTTCAAAGCTGTGAAACTTTCAAGTGGTCAAGGATTATGTGAATGATGAAGAAGCAGAGATGAAACTTGGATCTGATGTAGAACTGGCCTCGGTTGTTATTATCAAGTCTAATAATCTGTTTGAAGGGACAAAATGTGGACTACATTTTTTTTTCTACTGATATTGCGGTCTTCTGTTTATTTCATCTTTATGAGCAAAGTGTCAATCTTGGATTCATCATATTCACTAATTGCACGTTACATGCAAAATTTCATAAG
TAGTTTTTTCTCGAGTGTACATGCGCGTGTGGATGCAAGCGAGTGGTCGGATTATATGACGGTGTTATCAAATTCTTTGGCTATAAAGTAGGAATGAGCACTACATTTTTTCGACTGATATCAGTAACACTTTGACAAAATACTGAAAGTGAAGTGATCAAGTGTAGAGCCATGGCGATTCCTAATATACGGATCCCTTGTCGGCAGTTGTTCATCGACGGTGAATGGAGAGAACCCCTCAAGAAGAACCGATTACCCATCATCAATCCGGCCAATGAAGAAATTATCGGGTATATTCCCGCAGCTACAGAGGAGGATGTAGATATGGCCGTCAAAGCTGCACGGAGTGCGCTTCGTCGAGATGACTGGGGTTCTACTACTGGAGCACAGCGTGCCAAATATCTTCGTGCTATTGCTGCTAAGGTACTGGAGAAAAAGCCTGAACTGGCTACACTTGAGACTATCGATAATGGAAAACCCTGGTTCGAGGCTGCCTCGGATATAGATGATGTCGTAGCGTGTTTTGAGTACTATGCAGATCTAGCTGAAGCTTTGGATTCAAAAAAGCAGACTGAAGTTAAACTTCATTTGGATTCATTCAAGACCCATGTTTTAAGAGAACCTCTTGGTGTTGTGGGGTTGATTACTCCATGGAATTATCCTCTTTTGATGACCACATGGAAAGTCGCTCCTGCCCTAGCAGCTGGTTGTGCAGCAATACTCAAGCCATCAGAACTAGCATCTATTACCTCTTTGGAGTTGGGTGAAATCTGTAGAGAGGTGGGTCTTCCTCCTGGTGCCCTTAGCATACTAACGGGATTAGGACATGAAGCTGGTTCTCCTTTGGTATCACATCCTGATGTTGATAAGATTGCATTTACAGGAAGTGGCCCAACAGGGGTCAAGATCATGACCGCTGCAGCTCAACTTGTTAAACCAGTTACTCTTGAGCTTGGTGGAAAAAGTCCAATAGTTGTGTTTGATGACATTCATAACCTTGATACAGCTGTGGAGTGGACTCTTTTTGGCTGCTTTTGGACAAATGGTCAAATTTGCAGTGCAACTTCACGTCTTATAATACAGGAAACAATTGCTCCACAATTTTTGGCCAGGCTTCTTGAGTGGACAAAAAACATCAAAATCTCAGATCCCTTGGAAGAAGACTGCAAGCTTGGTCCTGTCATTAGTCGTGGACAGTATGAGAAGATCTTGAAGTTCATCTCTACAGCCAAAGATGAAGGTGCAACCATTCTTTATGGTGGTGACCGACCTGAGCACTTAAAGAAAGGATATTACATTCAACCAACAATCATAACTGATGTTGATACGTCCATGGAGATCTGGAAAGAGGAGGTATTTGGACCTGTTCTTTGTGTCAAAACATTTAAAATTGAAGAGGAAGCCATTGAACTAGCAAATGATACCAAGTTTGGTTTGGGTGCTGCTATTTTGTCAAAAGATCTTGAAAGATGTGAACGTTTCACAAAGGCTTTTCAGTCGGGGATTGTCTGGATCAACTGCTCGCAGCCATGCTTTTGGCAACCACCATGGGGGGGTAAGAAGCGTAGTGGTTTTGGACGTGAGCTTGGGGAATGGAGTCTCGAGAACTACCTAAACATTAAACAGGTGACTCAGTATGTGACTCCGGACGAACCATGGGCTTTTTACAAGTCTCCTTCAAAGCTGTGAAACTTTCAAGTGGTCAAGGATTATGTGAATGATGAAGAAGCAGAGATGAAACTTGGATCTGATGTAGAACTGGCCTCGGTTGTTATTATCAAGTCTAATAATCTGTTTGAAGGGACAAAATGTGGACTACATTTTTTTTTCTACTGATATTGCGGTCTTCTGTTTATTTCATCTTTATGAGCAAAGTGTCAATCTTGGATTCATCATATTCACTAATTGCACGTTACATGCAAAATTTCATAAG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g113800.2.1 | SL2.50ch03:63841980..63849222 | 506 | - | n/a |
Add items to a list:
| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g113800.2 | SL2.50ch03:63841737..63849393 | 7,657 | - | n/a |
Add items to a list:
| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g113800.2.1.1 | SL2.50ch03:63849105..63849393 | 289 | - | 2 |
| exon | exon:Solyc03g113800.2.1.10 | SL2.50ch03:63844483..63844596 | 114 | - | n/a |
| exon | exon:Solyc03g113800.2.1.11 | SL2.50ch03:63842926..63843003 | 78 | - | n/a |
| exon | exon:Solyc03g113800.2.1.12 | SL2.50ch03:63842689..63842840 | 152 | - | 1 |
| exon | exon:Solyc03g113800.2.1.13 | SL2.50ch03:63842546..63842606 | 61 | - | n/a |
| exon | exon:Solyc03g113800.2.1.14 | SL2.50ch03:63842337..63842443 | 107 | - | 1 |
| exon | exon:Solyc03g113800.2.1.15 | SL2.50ch03:63841737..63842074 | 338 | - | n/a |
| exon | exon:Solyc03g113800.2.1.2 | SL2.50ch03:63848736..63848869 | 134 | - | n/a |
| exon | exon:Solyc03g113800.2.1.3 | SL2.50ch03:63847946..63848026 | 81 | - | n/a |
| exon | exon:Solyc03g113800.2.1.4 | SL2.50ch03:63847713..63847861 | 149 | - | 1 |
| exon | exon:Solyc03g113800.2.1.5 | SL2.50ch03:63846718..63846810 | 93 | - | 1 |
| exon | exon:Solyc03g113800.2.1.6 | SL2.50ch03:63846512..63846635 | 124 | - | n/a |
| exon | exon:Solyc03g113800.2.1.7 | SL2.50ch03:63846347..63846412 | 66 | - | n/a |
| exon | exon:Solyc03g113800.2.1.8 | SL2.50ch03:63846183..63846252 | 70 | - | 2 |
| exon | exon:Solyc03g113800.2.1.9 | SL2.50ch03:63845699..63845775 | 77 | - | n/a |
| intron | intron:Solyc03g113800.2.1.10 | SL2.50ch03:63844597..63845698 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.11 | SL2.50ch03:63843004..63844482 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.12 | SL2.50ch03:63842841..63842925 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.13 | SL2.50ch03:63842607..63842688 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.14 | SL2.50ch03:63842444..63842545 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.15 | SL2.50ch03:63842075..63842336 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.2 | SL2.50ch03:63848870..63849104 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.3 | SL2.50ch03:63848027..63848735 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.4 | SL2.50ch03:63847862..63847945 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.5 | SL2.50ch03:63846811..63847712 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.6 | SL2.50ch03:63846636..63846717 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.7 | SL2.50ch03:63846413..63846511 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.8 | SL2.50ch03:63846253..63846346 | n/a | - | n/a |
| intron | intron:Solyc03g113800.2.1.9 | SL2.50ch03:63845776..63846182 | n/a | - | n/a |
Add items to a list:
| Related views |
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
