Solanum lycopersicum mRNA Solyc03g111760.2.1
 mRNA details
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| Name | Type |
Length
3,080
|
Organism |
|
Description
Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
|
|
Location(s)
SL2.50ch03:62394005..62399968
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0003676
- Length
- 5964
- Nb exon
- 22
- Sifter term
- GO:0035197
- GO:0019899
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g111760.2.1 Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
GTATGCTAATGATGATAAAATTTCGAAGTTAAGGATGTCTTTTGACCAAGTAGAGAGGTCTAGGAGGAGCGTGGAATTCTTTGAGAAGCCTCGAAGAAGCATCGACCAGCAAATGGAAAAAGCGCGAAAAAGTGTGGACTGGCTAGATAGAATAAGAGCTGGTTGATATATTTGTAAATTTCATGTTCAAGTCAATTGTGGGGGAGTATAATAGTGCAACAACTTAACAATTAATTTATGGTTATCGGGTGTGATTTAGTTAATGTTCAACGGAGCCTATCTGTTTCTTTTCTTCTTTGTGCTTCTTCTTTCTGTTATGAAAAGAACAAATGAGAAATATAGTTTGGCGTCTCATTACAGTTTTGAGTTTGATCAAGAAGCAGTCAATGGTGTCTAAGGAGTTATTCCCATATTTGCCAAACTTTAATCAGATGAACAGACCTCGTCCGGGGGTCAAGGGAAAGAAGATACGTCTGCTGACAAATTATTTTAGAGTATGCTTTCAAGGTGGCATAAGCCAACTATATTCATACAATGTTAATATCCTATATGAAAATGGGGACCCTGTAACTGGAAGCAACTTAATTAGAAAAGTGATTCATAAACTCTGGGAGATATACAGCTCTGAGTTAGGAGAGCAAGTATTTGCTTCTGATGGGCAACAGAGCTTGTTCACAACTAGTCTTTTACCACAGCAGAAGCTAGATTTCACAGTTGTACTTGATGCTGCAACATCAAAAAGGTGGAAGACGGATGGCAACCTTAGTGGCGATGGAGAATTAAGTGAGGGTGATCAAAAGAGGCAGAAGATTATATCCCGATTCAAAACTTTCAGAATACAGATAAACTTTGTTTCCATCATCCCCTTTAAGACAATGCCTGATGGAAAGCATGGAGTAAAATCAAGAAACAATGAAGTTCTGATAGCATTAGACACCATTTTGCAACACTCTAATGCAAAAAGGTGCATACTGCATACTGATCCACAAAAGAACAGCCTTCTGCTCCGCCAATCGTACTTCCCCAACGAGATGAAGAACTTCATGGACTTGACTGGTGGTATCCTTGGATGCCGAGGTTTTCATTCGAGTTTCCAATCTGTTCAAGGTGGATTGTATTTCAACCTTGATACATCTACTACAACACTTATACAGCCAGGTCCACTAGTTAACTTTTTAATGGCCAACCAAAATGTGGAAATTCCCTTCAAAATCGACTGGACTAAGGCAAAAATCTTGAAAAATCTCAGAATTAAGCTATTACACTCCAATAGAGAACACAAAATCACTGGACTTAGCAACAGGACATGTAAAGAGGAGAAGTTTCTTCTGCGGTTGAGGGGATCCAATAATCAAAATGACAATGGCCAGACTGTTGAGATAACTGTTTATGAATATTTTGTTAGGAGATGTGGAATAGAACTCGGTTATTCATCAAACTTGCCATGCATCAATGTGGGGAGCCAGCACAAACCCCAGTTCATTCCTGTTGAGCTCTGTTCGTTGGTTCCCTTACAACGATTCAAAAAGGAATTATCCTTACATCAAAGATCCTTATTAGTGAACAACTCGAGCCAAAAGCCGATAGAGCTCATGAAGCATTTAAATGAGGAACTTAAAGCCAACGACTATAACACAGACCCTATGCTGCGCGCTTGTGGAATCTCAATTAATAAATCTTATACTGAAGTAGAGGGAAGAGTTCTATTTCCTCCACAGTTGAGAGTGGGAAACAAGGAATATCTTGCTTCAAGATTTTCGCGCTGGAGCTTTAACGGCAAGAAGTTTGCAGATCCAAAAAGCATTGAATTTTGGGCTGTGGTGAACTTCTCTACTGGTCATGACATACGTGCTTTCTGCATTGAAATGGCGAAATTGGGTGCAATGAGAGGAATGCACATTCATCCACCATCATTTGTTTTCGAAGAGAATGCTAAGCATAAAAAGAAACCGGGATCTGTTCGAGTGAACAAGATGTTTGAACAAATAATTCCAAAATTTCGCAAGGATCCTCCTCGATTCCTTCTTTGCTTTCTTCCTGCAAAGTTTTCTAATTTATATGGTCCATGGAAGAAAAAGTGTCTTATGACCTTCGGAATTCGTAACCAGTGCATTGCAAAGAACAAAGTTGATGAAACTTATCTTGCTAATGTTATGTTAAAAATTAATGCAAAAGTATGGGACACTAATCGCTTCTTTACATATATGTTGATCACTCATAAAAATTCTAAAAGTTTGGTTGTGCTGCAGCTTGGTGGTCTGAATTCTATGTTATCAGCAGAAGTTTCACAGACTATCCCCTTAGTTTCTAAAGTTCCCACAATGATCTTAGCAATGGGTCTTACGCATGCCCCTTCTTCACGGTCAGATTTACCCTCCGTTGCTGCAGTGGTCGGTTCTAGACAGTGGCCGATGATTTCTTACTATAGAGCATCTACTTGTATCCAACCACCAAAGACCGAAACTATACATTCTCTCTTTAGACCAGTTTCAGATAGGGAGGACACAGGCATGATCAGGGAGCTCCTAATGGATTTTCATGCAAGTTCAGGGAATAGGAAGCCTGAACAGATTATTATATTCAGACAAGGTTTAGGTGAATCTCAATTCAATCATATCTTTAGCGAAATGGAGGAAATTATTAAGGCCTGTAAGTTCCTGGATGAGACTTGGTCTCCTAAGTTCACTCTTATTGTTGCACAAAGAAGACATCACACAAAGTTGTTCCAACCTAATTCCAGTGACAATATTCCTCCTGGAACAGTCGTTGATACTAAAATTTGTCATCCGCTGTATAATAACAACTTCTACATATGTGCACATGCGGCAAGAGTTGGGACTAGCAGGCCAATTCACTACTTTGTGCTGTTGGATGAAATAGGTTTCTCATCTGATACTGTGCAGGAACTAGTCCATTGTTTATGTTACGTGTCTCAGAGATGCACCAGTGCTATATCTGAAGTGGCTCCAATTCGTTATGCTCGTTTGGTTTCAGCTCAGATGTTAGAAATTATGAAGACTGAGGGGCCTGAACTGCCAATGTTGCACAAAAATGTGCGCGATACAATGTTTTTCTGCTGA
GTATGCTAATGATGATAAAATTTCGAAGTTAAGGATGTCTTTTGACCAAGTAGAGAGGTCTAGGAGGAGCGTGGAATTCTTTGAGAAGCCTCGAAGAAGCATCGACCAGCAAATGGAAAAAGCGCGAAAAAGTGTGGACTGGCTAGATAGAATAAGAGCTGGTTGATATATTTGTAAATTTCATGTTCAAGTCAATTGTGGGGGAGTATAATAGTGCAACAACTTAACAATTAATTTATGGTTATCGGGTGTGATTTAGTTAATGTTCAACGGAGCCTATCTGTTTCTTTTCTTCTTTGTGCTTCTTCTTTCTGTTATGAAAAGAACAAATGAGAAATATAGTTTGGCGTCTCATTACAGTTTTGAGTTTGATCAAGAAGCAGTCAATGGTGTCTAAGGAGTTATTCCCATATTTGCCAAACTTTAATCAGATGAACAGACCTCGTCCGGGGGTCAAGGGAAAGAAGATACGTCTGCTGACAAATTATTTTAGAGTATGCTTTCAAGGTGGCATAAGCCAACTATATTCATACAATGTTAATATCCTATATGAAAATGGGGACCCTGTAACTGGAAGCAACTTAATTAGAAAAGTGATTCATAAACTCTGGGAGATATACAGCTCTGAGTTAGGAGAGCAAGTATTTGCTTCTGATGGGCAACAGAGCTTGTTCACAACTAGTCTTTTACCACAGCAGAAGCTAGATTTCACAGTTGTACTTGATGCTGCAACATCAAAAAGGTGGAAGACGGATGGCAACCTTAGTGGCGATGGAGAATTAAGTGAGGGTGATCAAAAGAGGCAGAAGATTATATCCCGATTCAAAACTTTCAGAATACAGATAAACTTTGTTTCCATCATCCCCTTTAAGACAATGCCTGATGGAAAGCATGGAGTAAAATCAAGAAACAATGAAGTTCTGATAGCATTAGACACCATTTTGCAACACTCTAATGCAAAAAGGTGCATACTGCATACTGATCCACAAAAGAACAGCCTTCTGCTCCGCCAATCGTACTTCCCCAACGAGATGAAGAACTTCATGGACTTGACTGGTGGTATCCTTGGATGCCGAGGTTTTCATTCGAGTTTCCAATCTGTTCAAGGTGGATTGTATTTCAACCTTGATACATCTACTACAACACTTATACAGCCAGGTCCACTAGTTAACTTTTTAATGGCCAACCAAAATGTGGAAATTCCCTTCAAAATCGACTGGACTAAGGCAAAAATCTTGAAAAATCTCAGAATTAAGCTATTACACTCCAATAGAGAACACAAAATCACTGGACTTAGCAACAGGACATGTAAAGAGGAGAAGTTTCTTCTGCGGTTGAGGGGATCCAATAATCAAAATGACAATGGCCAGACTGTTGAGATAACTGTTTATGAATATTTTGTTAGGAGATGTGGAATAGAACTCGGTTATTCATCAAACTTGCCATGCATCAATGTGGGGAGCCAGCACAAACCCCAGTTCATTCCTGTTGAGCTCTGTTCGTTGGTTCCCTTACAACGATTCAAAAAGGAATTATCCTTACATCAAAGATCCTTATTAGTGAACAACTCGAGCCAAAAGCCGATAGAGCTCATGAAGCATTTAAATGAGGAACTTAAAGCCAACGACTATAACACAGACCCTATGCTGCGCGCTTGTGGAATCTCAATTAATAAATCTTATACTGAAGTAGAGGGAAGAGTTCTATTTCCTCCACAGTTGAGAGTGGGAAACAAGGAATATCTTGCTTCAAGATTTTCGCGCTGGAGCTTTAACGGCAAGAAGTTTGCAGATCCAAAAAGCATTGAATTTTGGGCTGTGGTGAACTTCTCTACTGGTCATGACATACGTGCTTTCTGCATTGAAATGGCGAAATTGGGTGCAATGAGAGGAATGCACATTCATCCACCATCATTTGTTTTCGAAGAGAATGCTAAGCATAAAAAGAAACCGGGATCTGTTCGAGTGAACAAGATGTTTGAACAAATAATTCCAAAATTTCGCAAGGATCCTCCTCGATTCCTTCTTTGCTTTCTTCCTGCAAAGTTTTCTAATTTATATGGTCCATGGAAGAAAAAGTGTCTTATGACCTTCGGAATTCGTAACCAGTGCATTGCAAAGAACAAAGTTGATGAAACTTATCTTGCTAATGTTATGTTAAAAATTAATGCAAAAGTATGGGACACTAATCGCTTCTTTACATATATGTTGATCACTCATAAAAATTCTAAAAGTTTGGTTGTGCTGCAGCTTGGTGGTCTGAATTCTATGTTATCAGCAGAAGTTTCACAGACTATCCCCTTAGTTTCTAAAGTTCCCACAATGATCTTAGCAATGGGTCTTACGCATGCCCCTTCTTCACGGTCAGATTTACCCTCCGTTGCTGCAGTGGTCGGTTCTAGACAGTGGCCGATGATTTCTTACTATAGAGCATCTACTTGTATCCAACCACCAAAGACCGAAACTATACATTCTCTCTTTAGACCAGTTTCAGATAGGGAGGACACAGGCATGATCAGGGAGCTCCTAATGGATTTTCATGCAAGTTCAGGGAATAGGAAGCCTGAACAGATTATTATATTCAGACAAGGTTTAGGTGAATCTCAATTCAATCATATCTTTAGCGAAATGGAGGAAATTATTAAGGCCTGTAAGTTCCTGGATGAGACTTGGTCTCCTAAGTTCACTCTTATTGTTGCACAAAGAAGACATCACACAAAGTTGTTCCAACCTAATTCCAGTGACAATATTCCTCCTGGAACAGTCGTTGATACTAAAATTTGTCATCCGCTGTATAATAACAACTTCTACATATGTGCACATGCGGCAAGAGTTGGGACTAGCAGGCCAATTCACTACTTTGTGCTGTTGGATGAAATAGGTTTCTCATCTGATACTGTGCAGGAACTAGTCCATTGTTTATGTTACGTGTCTCAGAGATGCACCAGTGCTATATCTGAAGTGGCTCCAATTCGTTATGCTCGTTTGGTTTCAGCTCAGATGTTAGAAATTATGAAGACTGAGGGGCCTGAACTGCCAATGTTGCACAAAAATGTGCGCGATACAATGTTTTTCTGCTGA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g111760.2.1 | SL2.50ch03:62394004..62399639 | 917 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g111760.2 | SL2.50ch03:62394005..62399968 | 5,964 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g111760.2.1.1 | SL2.50ch03:62399593..62399968 | 376 | - | n/a |
| exon | exon:Solyc03g111760.2.1.10 | SL2.50ch03:62396587..62396694 | 108 | - | n/a |
| exon | exon:Solyc03g111760.2.1.11 | SL2.50ch03:62396430..62396492 | 63 | - | n/a |
| exon | exon:Solyc03g111760.2.1.12 | SL2.50ch03:62396246..62396359 | 114 | - | n/a |
| exon | exon:Solyc03g111760.2.1.13 | SL2.50ch03:62395989..62396154 | 166 | - | n/a |
| exon | exon:Solyc03g111760.2.1.14 | SL2.50ch03:62395590..62395915 | 326 | - | 2 |
| exon | exon:Solyc03g111760.2.1.15 | SL2.50ch03:62395361..62395491 | 131 | - | n/a |
| exon | exon:Solyc03g111760.2.1.16 | SL2.50ch03:62395146..62395211 | 66 | - | 1 |
| exon | exon:Solyc03g111760.2.1.17 | SL2.50ch03:62394927..62394987 | 61 | - | 1 |
| exon | exon:Solyc03g111760.2.1.18 | SL2.50ch03:62394727..62394838 | 112 | - | n/a |
| exon | exon:Solyc03g111760.2.1.19 | SL2.50ch03:62394553..62394629 | 77 | - | 2 |
| exon | exon:Solyc03g111760.2.1.2 | SL2.50ch03:62398471..62398630 | 160 | - | 1 |
| exon | exon:Solyc03g111760.2.1.20 | SL2.50ch03:62394333..62394427 | 95 | - | n/a |
| exon | exon:Solyc03g111760.2.1.21 | SL2.50ch03:62394221..62394252 | 32 | - | 1 |
| exon | exon:Solyc03g111760.2.1.22 | SL2.50ch03:62394005..62394123 | 119 | - | 2 |
| exon | exon:Solyc03g111760.2.1.3 | SL2.50ch03:62398183..62398388 | 206 | - | n/a |
| exon | exon:Solyc03g111760.2.1.4 | SL2.50ch03:62397813..62398061 | 249 | - | 1 |
| exon | exon:Solyc03g111760.2.1.5 | SL2.50ch03:62397618..62397754 | 137 | - | 1 |
| exon | exon:Solyc03g111760.2.1.6 | SL2.50ch03:62397431..62397528 | 98 | - | 2 |
| exon | exon:Solyc03g111760.2.1.7 | SL2.50ch03:62397264..62397358 | 95 | - | n/a |
| exon | exon:Solyc03g111760.2.1.8 | SL2.50ch03:62396995..62397166 | 172 | - | 1 |
| exon | exon:Solyc03g111760.2.1.9 | SL2.50ch03:62396777..62396893 | 117 | - | n/a |
| intron | intron:Solyc03g111760.2.1.10 | SL2.50ch03:62396695..62396776 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.11 | SL2.50ch03:62396493..62396586 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.12 | SL2.50ch03:62396360..62396429 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.13 | SL2.50ch03:62396155..62396245 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.14 | SL2.50ch03:62395916..62395988 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.15 | SL2.50ch03:62395492..62395589 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.16 | SL2.50ch03:62395212..62395360 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.17 | SL2.50ch03:62394988..62395145 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.18 | SL2.50ch03:62394839..62394926 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.19 | SL2.50ch03:62394630..62394726 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.2 | SL2.50ch03:62398631..62399592 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.20 | SL2.50ch03:62394428..62394552 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.21 | SL2.50ch03:62394253..62394332 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.22 | SL2.50ch03:62394124..62394220 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.3 | SL2.50ch03:62398389..62398470 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.4 | SL2.50ch03:62398062..62398182 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.5 | SL2.50ch03:62397755..62397812 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.6 | SL2.50ch03:62397529..62397617 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.7 | SL2.50ch03:62397359..62397430 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.8 | SL2.50ch03:62397167..62397263 | n/a | - | n/a |
| intron | intron:Solyc03g111760.2.1.9 | SL2.50ch03:62396894..62396994 | n/a | - | n/a |
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