Solanum lycopersicum mRNA Solyc03g110900.2.1

mRNA details  
Name Type Length
3,932
Organism
Description
Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_DANRE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core
Location(s)
SL2.50ch03:61618311..61637433
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005524
  • GO:0017111
Length
19123
Nb exon
28
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g110900.2.1 Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_DANRE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core

TCACACACCAAAGAAGAAACCCAAACAACTCTCTCTCTCTCCTTTTTCTCTCTATCTCTCTCCAGAGTTTTTTGGTCTCCGGGAAATGGTTGCGACGAGACGAAGTGGATCTCTGCCGTCGACTGTTAAACGGTCGGCCTCCTCCTCCGATGATTCTTCTTCTAAGCGACAAAAGGTGGTAGATAATAATAACAATAATAATAATGCGGAGTCGTCGGAGAAACCCAAGTCTCCTCCACCGACGGAGAATCCCAAGGAGTTGTCTTCTACTGACCCGCCGGAATTCGCCGCCGTTACAGCTCCCGACGGTGAGACCACCGCCGTTCCCGCCGCGAAGGGTGAAGATGCACCTTCCGTATCCGTTGTAGCAACTCCTATTGCAGAAGGGGCGACGCCTGCTATAGTTGATAAGCCCAGGAGTTCGGTGACTTTGAGGAAGCTGAATCAAGGTTCGGAAACAACATCGCCTTGGTGTAGGCTTATATCAGAGTTTCCTCAGAACCCAACTATTCATGTTTCAGCTACGAATTTCTTGATTGGTTCTAGCAAAAATGCTCATCTTCCTATCAAGCAACAAACAGTTAGTGCAACCTTATGTTCAATAAGGCTTACACAGCATGAAGGGAATTGGGTTGCTGTGCTTGAGAGCAGGGGCAAAGGATCTGTGCAAGTTAATGGAAAGACAGTTCGGAGAAGCACTAGTTGCATTCTCAATTCAGGCGATGAGCTTGTTTTTGGTGTTACAGGGAGTCATGCTTATATATTTGAGCAGCTGCCATATGAGCTTGGAGTTAAGTCACCTCCTTCAGATGTTAGGACCAGTGCAGGAAAATTGCTTCGCGTTGAGAGAAGAGCAGGAGATGCGTCAGCTGTAGCAGGTGCTTCCATTTTGGCATCGCTTTCAAGCCTGAGGCAAGACCCATCGCGCTTGAAACCTACGTCTCAGGTTAGTGGGAATGAGCTGCCTTCTTCCCCTGTTATTCATGAAGATGAGCTTGATGGCCTCGAAGTCGATTCAGCTGCACATGTTGGCAGCAGCAGTGCTGCTGATGTTTCATTGACTAGCAAAATTCCCCCGCTTGATGGAAACCTGAACGATAGCAGAGAGGCAGGCAACATGCCGGAGGAAAGAGAGTGGAACAGAGATTCAATACCAGCTTCCGCAGCAGGGGTGTCTCTAAGATGTGCAGTATTTAAAGAAGAGATTCATGCTGCAATAGTTGATGGACAACAACTAGATGTTTCATTTGATAGCTTCCCATATTACTTGAGCGAGAACACAAAAAATGTGCTGATTGCGGCTTCATATATACACCTGAAGCATAAAGAACAAGTAAAATATACTTCTGAGTTATCCACTATCAACCCAAGAATTCTGCTCTCAGGCCCTGCAGGATCCGAGATTTATCAGGAGATGCTGGCAAAGGCACTAGCTCATTATTATGGAGCAAAATTGCTCATCTTTGATAGCCATTCCTTTTTGGGTGGTCTATCAGCAAAGGAGGCTGAATTACTAAAAGAGGGAGGCAGTGCACATAAGATTTCTGCTAACTCCAAACAGATTCCTGGAGAACCTGATTTGTCTAAGGGCAATGGGTCATCATCTGGTCAAGTAACTAATGCTAACACTCTGACTGATCCTTTGGGTTTGGAAGCACACCCAAAGATGGAGATTGGCAATGTACCATCTTTAGCCGGGACATCAAAGAATACCTTGTTCAAGATAGGTGATAAAGTGAGGTTCATTGGTTCTGCTTCTGGTGGTTTATATTCAAACTCCACCAGGGGGCCAACTTTTGGTACTCGAGGGAAGATTGTGTTGCCTTTTGAAGATAATGCATTATCAAAAATTGGTGTAAGGTTTGATAAGCCTATACCAGACGGGGTTAACTTTGGGGGTCTTTGTGATGATGGTCATGGATTTTTTTGCAAGGCCAGCGAACTACGCTTGGAATCCACAGGTGCTGATGATCTGGACAAATTACTCATTAGCACGTTGTTTGAGGTCGTATTCAGCGAGAGCAGAAAGTCTCCCTTCATTTTATTTATGAAAGATGCTGAGAAATCAATGGCAGGGAGTTCAGAATCATATACAACTTTTAAAAATCGACTTGAAAAGCTTCCTGGTAACATCATTGTTATTGGATCTCATGCACATACAGATAACCGCAAGGAAAAGTCACATCCAGGGGGGTTGCTCTTCACCAAATTCGGCAGCAATCAAACTGCTTTGCTCGATTTGGCTTTCCCGGATAGTTTTGGGAAGTTGCATGACAGGGGAAAGGAAGTGACCAAGACAACTAAACTTCTGACAAAGCTTTTCCCCAACAAAGTGACCATTCACATGCCACAGGATGAAGCGCTTTTATCTGATTGGAAGCAACAGTTGGATCGAGATGCTGATACCCTCAAAATGAAAGGAAATTTGAATAGCTTGCGAACAGTTCTTAATCGGAATGGATTAGACTGTGATGGACTTGACACTTTGTGCATCAAAGACCAGACTTTTTCTGTTGAAAGTGCAGAGAAGGTGGTTGGATGGGCCTTAAGCCATCATTTGATGCAGAACCCTGATGCAAATCCTGACGTGAGGCTTGTTTTGTCTCCTCTGAGCATTCAATATGGATTGGAAATTCTACAAGCCATGCAAAATGAAAGCAAGAGCTTGAAGAAGTCACTTAAGGATATTGTGACTGAGAATGAATTTGAAAAGAGACTTCTGGCAGATGTTATCCCCCCCAGCGATATTGGAGTAACATTTGATGATATTGGTGCGCTTGAAAATGTCAAGGATACGTTAAAAGAGCTGGTCATGCTTCCTTTACAAAGACCGGAGCTCTTCTGCAAGGGTCAACTAACCAAGCCATGCAAGGGAATACTTCTATTTGGACCCCCCGGAACTGGGAAAACCATGCTTGCGAAAGCAGTTGCCACTGAAGCCGGTGCAAACTTTATCAACATTTCAATGTCAAGTATCACTTCAAAGTGGTTTGGCGAGGGTGAGAAATATGTGAAAGCTGTCTTCTCCCTGGCTAGTAAAATTGCTCCAAGTGTCGTTTTTGTCGATGAAGTTGATAGCATGCTGGGACGACGGGAAAATCCAGGAGAACATGAGGCCATGCGTAAAATGAAAAATGAATTCATGGTGAATTGGGATGGATTGCGTACAAAAGATACTGAACGAGTATTGGTTCTTGCAGCGACAAACAGACCATTTGATCTTGATGAGGCTGTCATAAGGCGACTGCCGCGTAGGCTGATGGTCAATTTACCAGATGCTCCAAATAGAGCGAAAATTCTAAAAGTCATACTTGCAAAAGAAGACTTGTCTCCAGATGTTGATCTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATCTTTGTGTTACAGCGGCATATCAACCCATTAGAGAAATCCTAGAAAAAGAAAAAAAGGAACATGCTGCAGCTATGGCAGAAGGTAGACCTACACCAACACCATGCGGTGGTGCAGACATACGACCTTTGAACATGGACGATTTCAAAAATGCTCACGAGCGGGTTTGTGCAAGTGTTTCATCGGAATCCATAAATATGACGGAGCTTCTTCAGTGGAATGAACTGTATGGAGAGGGGGGCTCTAGAAGGAAGAAGTCCTTGAGTTATTTTATGTAAAAGTTGTTCATATTGTACATTGATGTCTTAAGGAAGTTCTTAAAAATGTGATCTCCTCAGGCTCAGGTCAAGGTCAGTCGCCGCCCTTTGTGGTTTTCCATGACACCCTGGAAGTTTTTGTACAATGAGTATAGGTCTCTTAAGTTATACATGAGTTTTGAGATGTAATGAGGATGGAGTAGCCCTCTAGGAATAGGTAGTATCTCCACCTTCATTTTCTTTACCCTCTTTCTCACAACGAGCAGAAAGATGTCCGAGG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g110900.2.1SL2.50ch03:61618569..616373481,196-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g110900.2SL2.50ch03:61618311..6163743319,123-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g110900.2.1.1SL2.50ch03:61637259..61637433175-n/a
exonexon:Solyc03g110900.2.1.10SL2.50ch03:61632241..61632481241-2
exonexon:Solyc03g110900.2.1.11SL2.50ch03:61632052..6163210958-1
exonexon:Solyc03g110900.2.1.12SL2.50ch03:61628154..61628302149-2
exonexon:Solyc03g110900.2.1.13SL2.50ch03:61627980..6162805071-n/a
exonexon:Solyc03g110900.2.1.14SL2.50ch03:61627697..61627870174-n/a
exonexon:Solyc03g110900.2.1.15SL2.50ch03:61626895..6162696672-n/a
exonexon:Solyc03g110900.2.1.16SL2.50ch03:61626222..61626323102-n/a
exonexon:Solyc03g110900.2.1.17SL2.50ch03:61626051..6162614090-n/a
exonexon:Solyc03g110900.2.1.18SL2.50ch03:61624242..6162431776-2
exonexon:Solyc03g110900.2.1.19SL2.50ch03:61624007..6162410094-1
exonexon:Solyc03g110900.2.1.2SL2.50ch03:61636963..61637173211-2
exonexon:Solyc03g110900.2.1.20SL2.50ch03:61623840..6162390970-n/a
exonexon:Solyc03g110900.2.1.21SL2.50ch03:61623543..61623722180-n/a
exonexon:Solyc03g110900.2.1.22SL2.50ch03:61622673..61622795123-n/a
exonexon:Solyc03g110900.2.1.23SL2.50ch03:61622489..6162257284-n/a
exonexon:Solyc03g110900.2.1.24SL2.50ch03:61622203..61622387185-1
exonexon:Solyc03g110900.2.1.25SL2.50ch03:61621974..61622112139-n/a
exonexon:Solyc03g110900.2.1.26SL2.50ch03:61621827..6162188660-n/a
exonexon:Solyc03g110900.2.1.27SL2.50ch03:61618769..61618873105-n/a
exonexon:Solyc03g110900.2.1.28SL2.50ch03:61618311..61618683373-n/a
exonexon:Solyc03g110900.2.1.3SL2.50ch03:61636772..61636884113-n/a
exonexon:Solyc03g110900.2.1.4SL2.50ch03:61636561..61636677117-n/a
exonexon:Solyc03g110900.2.1.5SL2.50ch03:61635849..61635992144-n/a
exonexon:Solyc03g110900.2.1.6SL2.50ch03:61635307..61635663357-n/a
exonexon:Solyc03g110900.2.1.7SL2.50ch03:61635055..61635209155-1
exonexon:Solyc03g110900.2.1.8SL2.50ch03:61633219..61633340122-2
exonexon:Solyc03g110900.2.1.9SL2.50ch03:61633010..6163310192-n/a
intronintron:Solyc03g110900.2.1.10SL2.50ch03:61632482..61633009n/a-n/a
intronintron:Solyc03g110900.2.1.11SL2.50ch03:61632110..61632240n/a-n/a
intronintron:Solyc03g110900.2.1.12SL2.50ch03:61628303..61632051n/a-n/a
intronintron:Solyc03g110900.2.1.13SL2.50ch03:61628051..61628153n/a-n/a
intronintron:Solyc03g110900.2.1.14SL2.50ch03:61627871..61627979n/a-n/a
intronintron:Solyc03g110900.2.1.15SL2.50ch03:61626967..61627696n/a-n/a
intronintron:Solyc03g110900.2.1.16SL2.50ch03:61626324..61626894n/a-n/a
intronintron:Solyc03g110900.2.1.17SL2.50ch03:61626141..61626221n/a-n/a
intronintron:Solyc03g110900.2.1.18SL2.50ch03:61624318..61626050n/a-n/a
intronintron:Solyc03g110900.2.1.19SL2.50ch03:61624101..61624241n/a-n/a
intronintron:Solyc03g110900.2.1.2SL2.50ch03:61637174..61637258n/a-n/a
intronintron:Solyc03g110900.2.1.20SL2.50ch03:61623910..61624006n/a-n/a
intronintron:Solyc03g110900.2.1.21SL2.50ch03:61623723..61623839n/a-n/a
intronintron:Solyc03g110900.2.1.22SL2.50ch03:61622796..61623542n/a-n/a
intronintron:Solyc03g110900.2.1.23SL2.50ch03:61622573..61622672n/a-n/a
intronintron:Solyc03g110900.2.1.24SL2.50ch03:61622388..61622488n/a-n/a
intronintron:Solyc03g110900.2.1.25SL2.50ch03:61622113..61622202n/a-n/a
intronintron:Solyc03g110900.2.1.26SL2.50ch03:61621887..61621973n/a-n/a
intronintron:Solyc03g110900.2.1.27SL2.50ch03:61618874..61621826n/a-n/a
intronintron:Solyc03g110900.2.1.28SL2.50ch03:61618684..61618768n/a-n/a
intronintron:Solyc03g110900.2.1.3SL2.50ch03:61636885..61636962n/a-n/a
intronintron:Solyc03g110900.2.1.4SL2.50ch03:61636678..61636771n/a-n/a
intronintron:Solyc03g110900.2.1.5SL2.50ch03:61635993..61636560n/a-n/a
intronintron:Solyc03g110900.2.1.6SL2.50ch03:61635664..61635848n/a-n/a
intronintron:Solyc03g110900.2.1.7SL2.50ch03:61635210..61635306n/a-n/a
intronintron:Solyc03g110900.2.1.8SL2.50ch03:61633341..61635054n/a-n/a
intronintron:Solyc03g110900.2.1.9SL2.50ch03:61633102..61633218n/a-n/a
Add items to a list:

Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17768455%2Fdetails feature 17768455
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)