Solanum lycopersicum mRNA Solyc03g097550.2.1

mRNA details  
Name
Solyc03g097550.2.1
Type
mRNA
Length
1,361
Organism
Solanum lycopersicum
Description
Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD
Location(s)
SL2.50ch03:59877799..59885921
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0009451
  • GO:0003723
Length
8123
Nb exon
12
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g097550.2.1 Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD

ATGAATACGAAGAGGAAGCGAGAGGATATGGAGATTGTGTGGCAAACTCCGGCCAACCCACCGGAACGCCATGACTACATCTTCCGTAATGGAGTACGCTATGTTAAGCCTTACTACTTCGAATTCATCTCCCATGTGAAGAATAGGTGGGCTGGAAAGACAATTGTTGATCTCTTCTCTGATGAATTTAAAGGAAGACCTCGTGATTACTATGAATCTGCCGTTAAGTCTGGACGTATACAAGTTGATGGACGAAAGGTGTCTGTTTCATATGTAGTTCAGTCATCACAAAAAATTAGCCATTTCCTGCACAGGCATGAACCACCAGTGATGTCGTGGGATGTCGAAATACTATGTGAAGAACCAGATGTGCTAACAGTTTGCAAGCCTGCTTCTGTTCCTGTGCATCCATGTGGACAATACCGCAAGAATACGGTCGTTGGTATACTACAAGCCGAGTATGGCCTGGCACCTTTATTTCCGGTTCATCGCCTAGATCGCTTGGTCTCAGGACTACTTATTTTGGCTAGGAGTGCTTCTAGGGCTGACCTCTTCAGGCAACAGATAGAATCAGGGGTAGTGCAGAAACGGTATATTGCAAGAGTAATAGGAGTATTCCCAGAGAAGCAGCAAGTTGTGAATGCTAATGTCAATTACAATGCTCGAGAAGGGAGGAGCACAGTTGAGGTGGGGGATAACCAGGGAAATAGTACTGCTTCACTGAAGGGGAAGGCTGCCTGTACGAAATTTACAAGGATTAGTACCAATGGGAAGCAAAGCATCGTTTTGTGCGAACCCGTGACTGGCAGGACACATCAGATACGTGTGCATCTGCAATATACAGGTCATCCAATAGCCAATGATATGCTCTATATGTCTGAATTTGTGTCTAGTCGCGCTGCTGAAGGATTGAGCGCGGATAGAGCTGCAGCAAAATCATGTTCTCCTCCAGATCCCATCTCTCGAACTAGTGACATGGAAAATGACTCTAATGAAGATTTCAGCATTGATCCTATGTGTACAAATTGTCCAAATCTTGCTCCGAAAGGGTATGAGGGTAATGAAGAGGGTCTATGGCTGCATTGTGTAAAATATTCGGGACCTGACTGGATATATGAATGTCCACATCCAGATTGGGCATCTTTAAGTTGATATGCACTTTCAACATTCATTAGGTCTGATTTCAGAACTTTGTTATTCTCTTGGTGCTTTGTGTCTTGTGCTCTGTTCATTCTTGTGCAGCGGTATGCACTGTGTCCTGGTAAACTCCTGGAGTTCTGGGAATTTCTTACCGGGGAGGCACCCATACAGTGTTTTGGTTGGATTGGCTACTTTGAATTTGGATTTACGGGAGGGGCTAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g097550.2.1SL2.50ch03:59877798..59885712384+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g097550.2SL2.50ch03:59877799..598859218,123+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g097550.2.1.1SL2.50ch03:59877799..5987788991+n/a
exonexon:Solyc03g097550.2.1.10SL2.50ch03:59883680..59883811132+n/a
exonexon:Solyc03g097550.2.1.11SL2.50ch03:59884264..59884493230+n/a
exonexon:Solyc03g097550.2.1.12SL2.50ch03:59885610..59885921312+1
exonexon:Solyc03g097550.2.1.2SL2.50ch03:59877976..5987801944+2
exonexon:Solyc03g097550.2.1.3SL2.50ch03:59878110..5987818778+n/a
exonexon:Solyc03g097550.2.1.4SL2.50ch03:59878478..59878578101+n/a
exonexon:Solyc03g097550.2.1.5SL2.50ch03:59878787..5987887488+1
exonexon:Solyc03g097550.2.1.6SL2.50ch03:59880250..5988032879+n/a
exonexon:Solyc03g097550.2.1.7SL2.50ch03:59880453..5988053583+2
exonexon:Solyc03g097550.2.1.8SL2.50ch03:59882224..5988228966+n/a
exonexon:Solyc03g097550.2.1.9SL2.50ch03:59882420..5988247657+n/a
intronintron:Solyc03g097550.2.1.1SL2.50ch03:59877890..59877975n/a+n/a
intronintron:Solyc03g097550.2.1.10SL2.50ch03:59883812..59884263n/a+n/a
intronintron:Solyc03g097550.2.1.11SL2.50ch03:59884494..59885609n/a+n/a
intronintron:Solyc03g097550.2.1.2SL2.50ch03:59878020..59878109n/a+n/a
intronintron:Solyc03g097550.2.1.3SL2.50ch03:59878188..59878477n/a+n/a
intronintron:Solyc03g097550.2.1.4SL2.50ch03:59878579..59878786n/a+n/a
intronintron:Solyc03g097550.2.1.5SL2.50ch03:59878875..59880249n/a+n/a
intronintron:Solyc03g097550.2.1.6SL2.50ch03:59880329..59880452n/a+n/a
intronintron:Solyc03g097550.2.1.7SL2.50ch03:59880536..59882223n/a+n/a
intronintron:Solyc03g097550.2.1.8SL2.50ch03:59882290..59882419n/a+n/a
intronintron:Solyc03g097550.2.1.9SL2.50ch03:59882477..59883679n/a+n/a
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