Solanum lycopersicum mRNA Solyc03g063560.2.1

mRNA details  
Name
Solyc03g063560.2.1
Type
mRNA
Length
5,327
Organism
Solanum lycopersicum
Description
Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C
Location(s)
SL2.50ch03:34910979..34951547
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006537
  • GO:0008152
  • GO:0055114
Length
40569
Nb exon
33
Sifter term
GO:0005515
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g063560.2.1 Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C

ACATTCTCTCTTTCTCTCTAAACCATTGACTTTTTCTCTCTCTACCTACAACTATTTCACACTCACTCTGCGATTCTCTGTGTAGGGGAGGGTTCTGATTAGGTTTCATGGCGGTGAATTCCGTGGCAAACGTTCCGCAGTTACTCTACGGACAGTCACCGAAGATTCTAACTGGTAATAAAGACGGCTTGTTTGCTGATTTCCTTGGATTCTACTGTAAATCCAGCAAGCGGATTCGTAGAAGGATTGGTTATGCCGCCACTAATAGGAGAAGCTTGATTAATAAAAAGTGTAATGCTGTTCTTGACCTTCAACGTGGTGCCAGTAATGCATCTCGCCAGTCCTCTGATATAGTGCCTAAGGTTGCTGACTTGGATGACATATTATCTGAAAGAGGCGCATGTGGGGTTGGTTTTATTGCAAATTTGGACAATAAAGCGTCACATGGGATCGTCAAGGATGCTCTTGTAGCCCTTGGCTGCATGGAACATCGTGGAGGTTGTGGAGCTGACAATGATTCTGGTGATGGTTCTGGATTGATGACTTCGATTCCTTGGGATCTTTTCAATGATTGGGCTGAGAAAGAAGGAATTGCTGTCTTTGACAAGCTTCATACTGGCGTTGGGATGGTTTTTCTTCCGAATGATTCTAACCAGATGAATGAAGCCAAGAAAGTTATTTCCAATATCTTTAACAACGAGGGTCTTGAGGTGCTTGGATGGAGGTCGGTTCCAGTAGATTCTTCTGTAGTTGGATATTATGCAAAAGTAACAATGCCCAACATACAACAGGTTTTTGTTCGAGTTGTTAAAGAGGAAAATGTTGATGACATTGAAAGAGAACTCTATATCTGTAGAAAACTCATTGAGAGGGCTGTGAACTCAGAAATTTGGGGAAATGAACTTTATTTCTGTTCATTGTCCAATCAAACAATAGTTTACAAGGGAATGCTCCGTTCTGAAGTCCTCGGGAGGTTCTATTATGACTTACAAAATGAGCTCTATACATCTCCTCTTGCTATTTATCATCGTAGATTCAGTACAAACACCAGTCCCAGGTGGCCTCTTGCTCAACCAATGAGGTTTCTAGGTCATAATGGAGAGATCAACACTATACAGGGAAACTTGAATTGGATGCAATCCAGAGAGGCCTCATTGAAGTCAGCTGTTTGGCGTGACCGAGAGGATGAAATCCGTCCTTTTGGCAACCCAAAGGCATCTGATTCTGCAAATTTAGATAGTACTGCTGAATTACTCATAAGAAGTGGTCGGGCTCCTGAGGAAGCACTGATGATTCTCGTCCCAGAAGCATATCAAAATCATCCAACATTGTCAATTAAATATCCGGAGGTTCTTGATTTTTATAATTACTACAAAGGTCAGATGGAAGCTTGGGATGGGCCAGCCTTACTCTTATTCAGTGACGGGAAAATAGTTGGTGCTTGTCTTGATCGTAATGGACTTCGTCCTGCTAGATATTGGCGAACCAAAGACAACGTTGTCTATGTTGCATCTGAGGTTGGTGTGATACCCATGGATGAATCAAATGTAACAATGAAAGGGCGTTTAGGTCCTGGTATGATGATAAGCGTTGATCTTTCAAGTGGTCAGGTATTCGAGAATACAGAGGTCAAAAGGCGAGTTGCATTGTCCAATCCATATGGGGAGTGGATTAAAGAAAATTTGCGATCTTTGAAGCCTATGAACTTTTTTTCAACAACAGTAATGGATGGTGAAACAATTCTAAGACGCCAGCAGGCGTATGGCTATTCTAGTGAGGATGTTCAAATGGTTATTGAAAGTATGGCAGCACAAGGGAAGGAGCCTACATTTTGCATGGGAGACGATATTCCCTTGGCTGTATTATCTCAAAAGCCGCATATGCTATATGATTATTTCAAGCAACGGTTTGCTCAGGTTACAAATCCAGCTATTGATCCCCTCCGAGAAGGATTAGTCATGTCCCTTGAAGTCAATCTTGGCAAGCGTAGAAATATACTAGAGGCTGGACCTGAAAATGCTTCTCAGGTTATTTTGCCTAGTCCTGTACTTAATGAAGGAGAGCTTGAATCTCTTTTGAAAGATTTACACTTGAGACCTCATGTTTTGCCGACATTTTTTGATGTTGGGAAAGGAGTTGATGGGTCCTTGAAAAGGTCACTGGATAAACTATGTGAAGCAGCTGATGAGGCTGTCAGAAATGGTTCTCAACTGCTTGTTCTCTCTGATAGGTCTGACGAATTGGAAGCTACTCGCCCTGCAATTCCAATACTTCTTGCTGTAGGTGCCGTTCACCAGCATCTGATTCAAAATGGCCTTAGAATGTCTGCTTCAATTGTTGCTGATACTGCCCAATGCTTCAGTACTCATCAGTTTGCTTGCTTGATCGGATTTGGCGCAAGTGCTGTATGTCCATACTTGGCATTTGAGACATGTCGACAATGGCGCTTGAGCACTAAAACTGTGAATTTGATGCGAAATGGGAAAATGCCTAGTGTTACCATTGAACAAGCTCAAAAGAACTTTTGCAAGGCAATTAAATCTGGGCTTCTCAAAATTCTTTCAAAAATGGGGATCTCATTGCTCGCCAGTTATTGTGGTGCACAGATATTTGAAATCTATGGATTGGGGAAGGAGGTCATGGATATTGCATTCTGTGGCAGTAAATCAAGCATTGGTGGACTAACCCTTGATGAGCTGGCAAGAGAGACTTTATCATTCTGGGTGAAGGCCTTTTCTGAAGATACAGCAAAACGACTAGAGAATTATGGGTTCTTACAATTCAGACAAGGAGGTGAATACCATGGAAACAACCCAGAGATGTCAAAACTGCTCCATAAAGCTGTCCGCCAAAAGAGTGAAAGTGCATATTCAGTATATCAGCAGCATTTGGCTAATCGACCTGTAAACGTTCTCAGAGATCTTCTTGAATTCAAAAGTGATCGGTCGCCTATACCCGTTGGAAGAGTGGAACCTGCTTCAGCAATTGTGCAGCGGTTTTGCACTGGTGGCATGTCACTTGGAGCTATTTCAAGGGAAACTCATGAAGCTATTGCAATTGCAATGAATAGATTGGGTGGAAAGTCGAACTCAGGAGAAGGTGGTGAGGATCCAATTCGCTGGAAGCCGCTTACTGATGTCATTGATGGATATTCTCCAACACTTCCCCACCTTAAAGGTCTGCAAAATGGAGATACTGCAACAAGTGCAATTAAGCAGGTTGCTTCTGGACGCTTTGGTGTCACTCCTACATTTCTAGCTAATGCCGACCAGTTAGAAATTAAAATTGCTCAAGGTGCAAAGCCAGGTGAAGGTGGCCAATTGCCTGGTAAAAAAGTTAGCGCTTACATTGCTAGACTAAGGAATTCAAAACCTGGAGTTCCTCTTATATCTCCACCACCACACCATGATATTTATTCTATCGAGGATCTTGCTCAGTTGATTTATGATCTTCATCAGGTCAACCCAAGAGCTAAGGTATCTGTAAAGCTTGTCGCTGAAGCTGGTATTGGTACTGTGGCTTCTGGGGTGGCAAAGGGAAATGCTGATATCATACAGATATCAGGGCATGATGGGGGAACTGGAGCAAGCCCAGTAAGTTCAATTAAGCATGCTGGTGGCCCCTGGGAGCTTGGACTTACAGAGACACACCAGACACTCATTGAAAATGGGTTAAGAGAAAGGGTTGTTCTTAGAGTTGATGGTGGATTTAAAAGTGGTTTTGATGTCATGATGGCTGCAGCAATGGGTGCAGATGAGTATGGATTTGGTTCGGTAGCAATGATAGCCACGGGTTGTGTGATGGCTCGCATATGCCATACTAACAATTGTCCAGTTGGTGTTGCCAGTCAGAGAGAGGAGTTACGAGCTCGGTTCCCAGGTGTTCCAGGAGACCTTGTTAACTACTTTTTGTATGTTGCTGAAGAGGTGAGAGGCATGTTGGCTCAACTAGGCTATGAGAAACTGGATGACATAATTGGGCGCACAGATATACTTAGACCTCGAGATATATCATTAATGAAAACTCGGCATCTTGATCTTAGTTACATCCTTTCTAATGTTGGGTTGCCTGAATGGAGCAGCAGTATGATAAGGAATCAGGAAGTTCATAGTAATGGTCCTGTTCTTGATGATGTTTTGCTTGCAGATCCAAAGATATCTGATGCAATTGAGAATGAAAAGGTGGTCAACAAGACAGTTGAAATATATAATATTGACCGTGCTGTATGTGGTCGCATTGCGGGTGCCGTGGCTAAGAAATATGGTGATACTGGTTTTGCCGGACAGCTGAACATAACATTTACCGGGAGTGCTGGCCAATCTTTTGCTTGTTTTCTGACACCTGGAATGAACATCAGACTTATTGGAGAAGCTAATGACTATGTAGGAAAGGGCATGGCTGGAGGAGAGTTGGTTGTAACTCCCGTTGAAAATACTGGATTTGTTCCAGAGGATGCTACCATAGTAGGGAACACCTGCTTATATGGAGCAACAGGTGGTCAAGTATTTGTCAGAGGTAAAGCAGGAGAGCGTTTTGCTGTGAGGAATTCTCTTGCTCAAGCTGTTGTAGAAGGCACTGGGGACCACTGTTGTGAGTACATGACAGGAGGATGTGTTGTTGTGCTTGGAAAGGTTGGTAGAAATGTAGCTGCTGGTATGACTGGAGGTTTGGCATACATTCTAGATGAGGACGAAACATTTGTACCTAAGGTAAACAAGGAGATTGTTAAGATCCAAAGAGTGGTTGCTCCGGTGGGTCAAACACAGCTAAAGAACCTAATTGAAGCTCATGTGGAAAAAACTGGCAGCACAAAAGGCTCTGTTATCCTCAAAGACTGGGACAAATATTTGCCACTCTTTTGGCAATTGGTTCCACCCAGTGAAGAAGACACCCCTGAGGCCAGTGCTGAATATGAGCAACTAGCTTCTGGGCAGGAGGTCACTTTGCAATCTGCAGAAATGCCATTAAAATAAATTTAAATACCAATTATATGCACACAGGCACAACCATGACCACGGTCTAATGAGAAGACAGTTTGTACAGGAAATTCATTTTGAATTTTTAGAATCAGATTGTCTGCAAAAGAAAACAGTGAAATCTGAGAGAGAAATACTTAAGGATGCAAGCTTACCTTTATCAAAGAAGGGACACATATCTTTCGTGGTGCTTCAGCAGTTGTACAGTGATGATGGAGAAATTGTAAATTCTTGATTAATTATGGCATAGTCGTGCCTTTGCCAAGATTGCTTCACTGAAGAACTTGGAAGTTCACACAATGTTAATGCTTCTACTAGTCCTGGCCATTAAATCTCTTTTGGTTTTTGCGT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g063560.2.1SL2.50ch03:34911332..349514401,622-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g063560.2SL2.50ch03:34910979..3495154740,569-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g063560.2.1.1SL2.50ch03:34951186..34951547362-n/a
exonexon:Solyc03g063560.2.1.10SL2.50ch03:34934317..34934476160-n/a
exonexon:Solyc03g063560.2.1.11SL2.50ch03:34933925..34934035111-n/a
exonexon:Solyc03g063560.2.1.12SL2.50ch03:34933573..34933788216-n/a
exonexon:Solyc03g063560.2.1.13SL2.50ch03:34932938..34933095158-1
exonexon:Solyc03g063560.2.1.14SL2.50ch03:34932465..34932594130-n/a
exonexon:Solyc03g063560.2.1.15SL2.50ch03:34932191..3493224959-1
exonexon:Solyc03g063560.2.1.16SL2.50ch03:34931944..34932049106-n/a
exonexon:Solyc03g063560.2.1.17SL2.50ch03:34931106..3493120297-2
exonexon:Solyc03g063560.2.1.18SL2.50ch03:34929841..34929956116-n/a
exonexon:Solyc03g063560.2.1.19SL2.50ch03:34928244..34928441198-n/a
exonexon:Solyc03g063560.2.1.2SL2.50ch03:34944878..34945190313-2
exonexon:Solyc03g063560.2.1.20SL2.50ch03:34928029..34928139111-n/a
exonexon:Solyc03g063560.2.1.21SL2.50ch03:34927555..34927794240-n/a
exonexon:Solyc03g063560.2.1.22SL2.50ch03:34927348..3492744699-n/a
exonexon:Solyc03g063560.2.1.23SL2.50ch03:34925822..3492591796-n/a
exonexon:Solyc03g063560.2.1.24SL2.50ch03:34925478..34925675198-n/a
exonexon:Solyc03g063560.2.1.25SL2.50ch03:34925314..3492538875-n/a
exonexon:Solyc03g063560.2.1.26SL2.50ch03:34919621..34919749129-n/a
exonexon:Solyc03g063560.2.1.27SL2.50ch03:34919398..3491949699-n/a
exonexon:Solyc03g063560.2.1.28SL2.50ch03:34918625..34918767143-1
exonexon:Solyc03g063560.2.1.29SL2.50ch03:34918433..3491852694-n/a
exonexon:Solyc03g063560.2.1.3SL2.50ch03:34943403..34943845443-n/a
exonexon:Solyc03g063560.2.1.30SL2.50ch03:34917176..34917414239-1
exonexon:Solyc03g063560.2.1.31SL2.50ch03:34916981..3491705979-n/a
exonexon:Solyc03g063560.2.1.32SL2.50ch03:34912095..3491217884-n/a
exonexon:Solyc03g063560.2.1.33SL2.50ch03:34910979..34911512534-n/a
exonexon:Solyc03g063560.2.1.4SL2.50ch03:34943186..34943317132-n/a
exonexon:Solyc03g063560.2.1.5SL2.50ch03:34942322..3494242099-n/a
exonexon:Solyc03g063560.2.1.6SL2.50ch03:34941949..3494201971-1
exonexon:Solyc03g063560.2.1.7SL2.50ch03:34938010..3493810697-n/a
exonexon:Solyc03g063560.2.1.8SL2.50ch03:34937660..3493775293-n/a
exonexon:Solyc03g063560.2.1.9SL2.50ch03:34937225..34937370146-1
intronintron:Solyc03g063560.2.1.10SL2.50ch03:34934477..34937224n/a-n/a
intronintron:Solyc03g063560.2.1.11SL2.50ch03:34934036..34934316n/a-n/a
intronintron:Solyc03g063560.2.1.12SL2.50ch03:34933789..34933924n/a-n/a
intronintron:Solyc03g063560.2.1.13SL2.50ch03:34933096..34933572n/a-n/a
intronintron:Solyc03g063560.2.1.14SL2.50ch03:34932595..34932937n/a-n/a
intronintron:Solyc03g063560.2.1.15SL2.50ch03:34932250..34932464n/a-n/a
intronintron:Solyc03g063560.2.1.16SL2.50ch03:34932050..34932190n/a-n/a
intronintron:Solyc03g063560.2.1.17SL2.50ch03:34931203..34931943n/a-n/a
intronintron:Solyc03g063560.2.1.18SL2.50ch03:34929957..34931105n/a-n/a
intronintron:Solyc03g063560.2.1.19SL2.50ch03:34928442..34929840n/a-n/a
intronintron:Solyc03g063560.2.1.2SL2.50ch03:34945191..34951185n/a-n/a
intronintron:Solyc03g063560.2.1.20SL2.50ch03:34928140..34928243n/a-n/a
intronintron:Solyc03g063560.2.1.21SL2.50ch03:34927795..34928028n/a-n/a
intronintron:Solyc03g063560.2.1.22SL2.50ch03:34927447..34927554n/a-n/a
intronintron:Solyc03g063560.2.1.23SL2.50ch03:34925918..34927347n/a-n/a
intronintron:Solyc03g063560.2.1.24SL2.50ch03:34925676..34925821n/a-n/a
intronintron:Solyc03g063560.2.1.25SL2.50ch03:34925389..34925477n/a-n/a
intronintron:Solyc03g063560.2.1.26SL2.50ch03:34919750..34925313n/a-n/a
intronintron:Solyc03g063560.2.1.27SL2.50ch03:34919497..34919620n/a-n/a
intronintron:Solyc03g063560.2.1.28SL2.50ch03:34918768..34919397n/a-n/a
intronintron:Solyc03g063560.2.1.29SL2.50ch03:34918527..34918624n/a-n/a
intronintron:Solyc03g063560.2.1.3SL2.50ch03:34943846..34944877n/a-n/a
intronintron:Solyc03g063560.2.1.30SL2.50ch03:34917415..34918432n/a-n/a
intronintron:Solyc03g063560.2.1.31SL2.50ch03:34917060..34917175n/a-n/a
intronintron:Solyc03g063560.2.1.32SL2.50ch03:34912179..34916980n/a-n/a
intronintron:Solyc03g063560.2.1.33SL2.50ch03:34911513..34912094n/a-n/a
intronintron:Solyc03g063560.2.1.4SL2.50ch03:34943318..34943402n/a-n/a
intronintron:Solyc03g063560.2.1.5SL2.50ch03:34942421..34943185n/a-n/a
intronintron:Solyc03g063560.2.1.6SL2.50ch03:34942020..34942321n/a-n/a
intronintron:Solyc03g063560.2.1.7SL2.50ch03:34938107..34941948n/a-n/a
intronintron:Solyc03g063560.2.1.8SL2.50ch03:34937753..34938009n/a-n/a
intronintron:Solyc03g063560.2.1.9SL2.50ch03:34937371..34937659n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17759549%2Fdetails feature 17759549
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