Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc02g084720.2.1

mRNA details  
Name
Solyc02g084720.2.1
Type
mRNA
Length
3,068
Organism
Solanum lycopersicum
Description
Beta-galactosidase (AHRD V1 ***- Q9LLS9_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin
Location(s)
SL2.50ch02:47818628..47824752
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005529
  • GO:0005975
Length
6125
Nb exon
19
Sifter term
GO:0005515
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc02g084720.2.1 Beta-galactosidase (AHRD V1 ***- Q9LLS9_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin

TGCACATTATAGTTTTGAGGTGGAGGAAGAGGCAATTACTTGGACACAAGCACTGTGGTTGATCTTCAAAGCAAAAGTGGACTGACTTGCTGTGCACCCACATTGCAATTAAGCCTACCCTCCATAAATTTTCACCTTTTTGTTCCAAGATTCTTGATCTTGCTTCAAATTTCCCTCCACCCAGAAAGGAAAGTTGTGTTCTTGGATGTGTTTGTAAGATTAAAAAAAAAGAGAAAAAAAGGGAGGTGGAATCATGGAGGTTAACTCACTTCAGAAGTGGGTTCTGCTATGGTGTATAGTATTGTTTATTAGCTCTGGGTTGGTTCACTGTGATGTTACATATGATAGGAAAGCTATTGTGATTAATGGGCAAAGAAGATTACTTTTCTCTGGTTCTATACATTACCCTAGAAGTACCCCTGAGATGTGGGAAGATCTGATAAACAAGGCAAAAGAAGGGGGTTTGGATGTGGTTGAGACCTATGTCTTTTGGAATGTTCATGAGCCTTCTCCTGGCAATTACAATTTTGAAGGAAGATATGACCTGGTGAGGTTTGTAAAAACGATTCAGAAAGCAGGGCTGTATGCTCATCTTCGAATTGGCCCTTACGTTTGTGCAGAGTGGAATTTTGGAGGGTTTCCAGTATGGCTGAAGTATGTACCTGGCATTAGCTTCAGAGCTGATAATGAACCTTTCAAGAACGCAATGAAAGGGTATGCTGAGAAAATTGTTAACTTGATGAAGAGTCATAATCTTTTCGAGTCTCAGGGTGGTCCAATCATACTCTCACAGATTGAGAATGAGTATGGGCCTCAAGCCAAGGTACTTGGAGCACCGGGACATCAGTATTCAACATGGGCTGCAAATATGGCAGTTGGATTAGACACAGGCGTCCCATGGGTGATGTGCAAGGAAGAAGATGCACCAGATCCTGTGATCAACACATGCAATGGTTTCTACTGTGATAATTTCTTCCCAAACAAACCATACAAACCTGCAATTTGGACTGAAGCTTGGAGTGGATGGTTCTCGGAATTTGGCGGTCCCCTTCATCAGAGACCAGTTCAGGATTTGGCATTTGCTGTTGCCCAATTTATACAAAGAGGAGGATCTTTTGTTAACTATTACATGTACCATGGGGGCACGAACTTTGGACGCACTGCGGGTGGGCCATTCATCACTACCAGCTATGATTATGATGCTCCAATTGATGAGTATGGTTTGATCAGACAGCCAAAATATGGTCATCTCAAGGAGCTTCATAGAGCTGTCAAGATGTGTGAGAAATCCATAGTTTCTGCAGATCCAGCAATCACATCCTTGGGAAACCTTCAACAAGCATATGTGTACTCTTCAGAGACAGGGGGTTGTGCAGCTTTCTTGTCAAACAATGACTGGAAATCTGCTGCTAGAGTAATGTTCAATAATATGCACTATAATTTGCCTCCTTGGTCCATTAGCATCCTTCCTGATTGCAGAAATGTAGTCTTCAACACGGCCAAAGTTGGAGTTCAAACATCAAAGATGGAAATGCTACCGACTAACTCAGAGATGCTATCTTGGGAGACTTACAGTGAAGATATATCTGCATTAGATGACAGCTCATCAATTAGGTCTTTTGGTCTCTTGGAGCAAATAAATGTAACCAGAGATACAAGTGATTATTTGTGGTACATAACTAGTGTTGATATTGGTTCAACTGAGTCCTTCTTGCATGGTGGAGAGCTCCCTACTCTTATAGTTGAGACAACAGGCCATGCTATGCATGTGTTTATTAATGGTCAGCTCTCAGGTTCTGCATTTGGGACAAGGAAGAATAGGAGATTTGTATTTAAAGGAAAAGTCAATCTTCGTGCTGGCTCAAACAGAATTGCACTGCTTAGCGTGGCTGTCGGGCTGCCGAACATTGGTGGACATTTTGAAACATGGAGCACTGGCGTACTAGGTCCTGTTGCAATTCAAGGACTTGACCATGGAAAATGGGACTTGTCCTGGGCAAAGTGGACATATCAGGTTGGGCTTAAAGGGGAGGCCATGAATCTTGTTTCGACAAATGGTATTTCTGCCGTTGACTGGATGCAAGGTTCATTAATTGCACAGAAACAACAACCCTTGACATGGCATAAGGCTTACTTCAATACACCCGAAGGAGATGAGCCATTGGCTTTGGACATGAGCAGTATGGGTAAAGGTCAAGTATGGATTAATGGCCAGAGTATTGGTAGATATTGGACTGCATATGCTACTGGAGATTGCAATGGGTGCCAATATTCTGGAGTTTTTCGGCCTCCAAAATGTCAACTGGGATGTGGGGAACCAACTCAAAAATGGTACCATGTTCCTCGGTCTTGGTTAAAACCCACTCAAAATCTGTTGGTGCTTTTTGAAGAACTTGGCGGAGATCCCACAAGAATTTCTCTCGTGAAAAGATCAGTCACTAACGTATGTTCGAATGTAGCTGAATATCATCCAAACATTAAGAACTGGCAAATTGAGAACTACGGCAAAACCGAAGAGTTTCACCTACCCAAAGTTCGCATTCACTGTGCTCCTGGTCAATCTATTTCCTCCATTAAATTTGCAAGCTTCGGAACTCCTCTCGGAACCTGTGGGAGCTTCAAGCAAGGAACTTGCCATGCTCCCGACTCACACGCCGTTGTAGAAAAGAAATGTCTAGGACGCCAAACATGTGCTGTGACAATATCAAATAGCAACTTTGGAGAAGATCCCTGCCCCAACGTACTGAAGCGGTTGTCTGTAGAAGCACATTGTACACCTACTCAGAATTGAACAGTAAAAAAAAGAAAAGTTGTTCAGATGTTGCGTAACTTAGTGTACACCCATGAGGAAAAGGCTAGTGAGGTAAGAATAAACTGTGAAGCAAAGGAAATAGGAGGTAGTAGTTTGGTTGGTGAATGTTGTCAAGGAAAACTCCTGATACACGTTCATTAGGTAGTACTCTAAATTTTGGGGGTGCCGAAGGGGACTCTGTGAAGATAGCATATTTATACACGAGTTTGTAGATTGTTGGGAGTTCCAAAATGCCACTCCCATCTTAGAGTCTGGT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc02g084720.2.1SL2.50ch02:47818904..47824499846-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc02g084720.2SL2.50ch02:47818628..478247526,125-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc02g084720.2.1.1SL2.50ch02:47824329..47824752424-n/a
exonexon:Solyc02g084720.2.1.10SL2.50ch02:47822122..47822240119-n/a
exonexon:Solyc02g084720.2.1.11SL2.50ch02:47821871..47822035165-n/a
exonexon:Solyc02g084720.2.1.12SL2.50ch02:47821546..47821724179-1
exonexon:Solyc02g084720.2.1.13SL2.50ch02:47821050..47821159110-2
exonexon:Solyc02g084720.2.1.14SL2.50ch02:47820852..47820961110-n/a
exonexon:Solyc02g084720.2.1.15SL2.50ch02:47820050..47820160111-n/a
exonexon:Solyc02g084720.2.1.16SL2.50ch02:47819853..47819966114-n/a
exonexon:Solyc02g084720.2.1.17SL2.50ch02:47819578..47819780203-1
exonexon:Solyc02g084720.2.1.18SL2.50ch02:47819128..47819464337-n/a
exonexon:Solyc02g084720.2.1.19SL2.50ch02:47818628..47819027400-n/a
exonexon:Solyc02g084720.2.1.2SL2.50ch02:47824145..4782424096-n/a
exonexon:Solyc02g084720.2.1.3SL2.50ch02:47823938..47824050113-1
exonexon:Solyc02g084720.2.1.4SL2.50ch02:47823781..4782384767-n/a
exonexon:Solyc02g084720.2.1.5SL2.50ch02:47823578..4782367093-n/a
exonexon:Solyc02g084720.2.1.6SL2.50ch02:47823302..47823445144-n/a
exonexon:Solyc02g084720.2.1.7SL2.50ch02:47822908..4782299689-1
exonexon:Solyc02g084720.2.1.8SL2.50ch02:47822721..47822826106-n/a
exonexon:Solyc02g084720.2.1.9SL2.50ch02:47822511..4782259888-2
intronintron:Solyc02g084720.2.1.10SL2.50ch02:47822241..47822510n/a-n/a
intronintron:Solyc02g084720.2.1.11SL2.50ch02:47822036..47822121n/a-n/a
intronintron:Solyc02g084720.2.1.12SL2.50ch02:47821725..47821870n/a-n/a
intronintron:Solyc02g084720.2.1.13SL2.50ch02:47821160..47821545n/a-n/a
intronintron:Solyc02g084720.2.1.14SL2.50ch02:47820962..47821049n/a-n/a
intronintron:Solyc02g084720.2.1.15SL2.50ch02:47820161..47820851n/a-n/a
intronintron:Solyc02g084720.2.1.16SL2.50ch02:47819967..47820049n/a-n/a
intronintron:Solyc02g084720.2.1.17SL2.50ch02:47819781..47819852n/a-n/a
intronintron:Solyc02g084720.2.1.18SL2.50ch02:47819465..47819577n/a-n/a
intronintron:Solyc02g084720.2.1.19SL2.50ch02:47819028..47819127n/a-n/a
intronintron:Solyc02g084720.2.1.2SL2.50ch02:47824241..47824328n/a-n/a
intronintron:Solyc02g084720.2.1.3SL2.50ch02:47824051..47824144n/a-n/a
intronintron:Solyc02g084720.2.1.4SL2.50ch02:47823848..47823937n/a-n/a
intronintron:Solyc02g084720.2.1.5SL2.50ch02:47823671..47823780n/a-n/a
intronintron:Solyc02g084720.2.1.6SL2.50ch02:47823446..47823577n/a-n/a
intronintron:Solyc02g084720.2.1.7SL2.50ch02:47822997..47823301n/a-n/a
intronintron:Solyc02g084720.2.1.8SL2.50ch02:47822827..47822907n/a-n/a
intronintron:Solyc02g084720.2.1.9SL2.50ch02:47822599..47822720n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17736265%2Fdetails feature 17736265
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)