Sol Genomics Network

Solanum lycopersicum gene Solyc02g077260.2

Name Solyc02g077260.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc02g077260	Length 3,469

Description

Calmodulin binding protein (AHRD V1 **-* B6TIB2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region

Location(s)

SL2.50ch02:42250446..42253914

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3469

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc02g077260.2.1	SL2.50ch02:42250446..42253914	1,455	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc02g077260.2 SL2.50ch02:42253914..42250446 (sequence from reverse strand)
CAACCATTTGAAATATCCACTTAACATTTCACCCTCTGATGCAAATGAATTGAAGAGTTTAGCATATGTAAAATAATTTCAATCTGGATATTTTCATAACTAATACCGTTCCATGTTCCATTTGTTGTGAGCTGCAGCCGAGTAAGATATATATATATAACAAGCACCTGCAATGGGTTCTGCAGACTGGCTTAAGAATGTAATCGGTATGAGAAAAGCAAAGGATGGGAGATCGAAAAAAAATAAGGTAAGCTGTCATAGTTGTCTCATTAGTTCAAGACAGCCCATTTATTCCATATTTTTATTATAAATTTCGGAATCAGCAGTACTTTATAAGATCAATTGGATTCATATTTTTAGTTTGAAACAGGGAACATCAGCAAATAAAAAGTCTAATGGATGCAAAGGGCATAATCCCCTGCAGAAAGAGCCTTCTAAAATAACCAATATTGTCTTGATCAAGAACCAGAGGGAAATGGGAATACCTATTGAAGATAGAGCAGCTATTAAGATTCAGACAGCATTCCGCGCTTATTTGGTAAAAGCATATCATCCAACTATTATTTATAATAAGTAGCATATAGATGCTTTTGTGATTTATTCTTCTCGCCACTAGATATTTCTTGTGCGACTTTTCTTCTGATAACTTCTCTTGACACACTGATATTTCTGTTACAGAGTGATATGAACCTTCCTTTGTGTTACTGTCCCGATCATCAGACATACACTTACAAATATAGGACACTAATTAACCAATTAAAGAAGCACGTAGCATAATATCATTTTTATGTATCTGAAACATCCTAATTGTTCAATGCTCACTACCTTTTGTTATTACTCTTACAGAAGATTATAAGTAACATATTTCCCATCAAATCATTTGTATCATGCTATAAAGTAGAATCACAGTCTCTCTGAAAGAGGAGAGGTAACGTATCAAGCATAATGGTTTCGGTATCTTTTCTGTAATGCCACTGGACTTGTTTGATCACTCCTAAATCCTTGAATATTACTTGAAATAAAATATTTTATATCCTTCCAGTGTGACTTATTGTTTATTTAGTGCAAAGCGAACCAATGATGTCAGATGAGCATTTCTATAACCTCAAAATATGCAGTTTGAGAGACCTATTAGGATGGAATTGCTACGTAAAAAACTGATGTATATGTTTGAATTCTTTTCTCTAAATGTAAAGGTCTATGTCGAACTTTTAGACCAAAGATCCATTTAGTCAGCTGATAAATTATACTCCCTCAGTTTCGCTTTGTTTGACATAGTTCGGCTTGGCACAAAGTTTTCTATATAAATCCTCAATAACCATGTTACTCCATTTAAACTCATCTCACGCCAATATTATTTTTCAAACCTTCGAAACCAAAAGAAACCAATTCTGATTAATCAGGAAACCTCTACTTCACTGATGTAATATTGAAAACTTCTGAATGATCATGGTAAGGAAGTTGTTAAAATAATCATGTGCAGAATTGATGCTCAGGTGCTGTTGTTCCAGGTTACTCATTTTCTCTTATCTTACAAGACAATATTGGTTTTACTATTGTCTGAATCACCCAAAGGAAGTGCTTCAACTCTTGTTTTTAGATTGATAGAATTTTCTCCATTTGCAGGCTAGAAAAACTTTACGTCGATTAAAAGGACATACAAGGTTACAATCCCTGACACAACGTCCTTCAGTGAAAAAACAAGCTTCATCAGCTTTGAACTATATCTGTTCATGGAACACCATGCAAAATGAGATAAGAGCTCGTCGTGTCCACATGGTAATGGAAGGGCATCTTAAGAGGAAGAAGCACGAGAATCAATTGAAGCTAGAGACAAAGCTTCAAAACATAGAGGTTAGTTGGTGACATTTTTATGCCCATTAATTGTTATCCTACTAGCTTTTCTCCAGAGCCTTTGAAGCTTTTAAATCAGTATTTGCTTTCTCTTTCTGCTATCAATAGATTTTCTTGCCTGGATCATTCAACTAAATTATCATTTCTGTTAACCCTATGTAAATGATCCATTAGAGAAGATCCTCTTTGGTGGCAAGATAAATAAAAATAAGTTTCTACTATTAGAAGGAATGTGTGGAAATCCGTTAATAGAATTCAGATATCCAAACTCACTGAGTCAAAACGAAAGCTCCAGTTTGCTGCATTTTCTTCCATAGGATTATAATTCATGATGCTAAACCCTCGTAAGCTTATGCCTTTGATTTTACAGAAATTAAGCTATAAACTTCTCGAGCAAGAACTTTTCAACAAACTCTCTGCTTTAACTGCATTTTGTTTATCTTTTTTGTATTCCAATCAGAGGAGCTCATGACAGTTTCTATGTCTTATGATGCCTTCTCACTTGACAAAGATTACGAATTATGCTCTATTTGGGACTAAGGCGTAGTAGTTGTTCTCTCGAGCAAAAAGTATAAACTAGAAGCCAAACTAAATACTTGCACAAACCCATATTTATATTGCTTTCTCTAGTTGTGTTTGACATATCTTGTCCATGGTGCAATTTCGTATCCTACCTAGCTATATTATTTCTTGCTAACATTAGTGAACGGCTGACAGATAGAATGGAGTGGTGGCCCCGAAACAATGGAAGTTATTCTAGCAAGGATTCACCAGAGAGAAGAAGCAGCTGTTAAACGCGAACGAGCTATGGCCTATGCATTTTCTCATCAGGTATATTAAACTGGATGACAATCTTCAGCTTGTTTATACTGCCATTACAGAACAGGAATTCCTACTGAAATAATATGATGTTACAGTGGAGGGCCAATTCCAACCCAGTATTTGGTTCTGGAAATAATGAAATGAACAAAGCTAATTGGGGCTGGAGCTGGAAGGATCGGTGGGTTGCTGCTCGACCATGGGAAAGCCGAGCTCTTGTTCATGCAAGTCCAAAGAAAGTCAACGACAAAGCAAACAAGAACACTAAAAGTACTACAAGCCCGATAAAGAAAACACCAGTTTCTGTTATATTAACTTCTCTCAATGGGAAAGGCACTATAAAGGCTAAAAAGTCCAATGAAGTAGCTGCACAAAAAGTGATGAGCAACGAAGTTAAGGAGACCAGCAGTGAAAAACAATAGATGGTAATCGAAGCTTACTGAAAATACGAAGCCTAGACATTTCGGGTTATGCATTTTGCTGGTGATGAAGGTGAAAAAAAACTTGTAAGTTATAATCACTGGACTGAGAGTTTGTCATTGTGTTCTTTATATTTCCAAATTCTTCTCTTCATATGTTTATCTGAGATGATAAGTTATTCATAGGTTAACATGTGTGTAGATATCACGTCTCATTCAAGAGAATTTATATTATAGCTTGGCGTGCTCAGAAAATTCTGTTCCTTTTATCTATTTATCGTTTAATTTAATGAGTAGCATATAGCAAAAAACTCTGCATCTAATTTGCAGTCCGGAGCCAAAAAGGCCTACTTTTTTTTTTGTATACAATGTCTGTC

Download sequence region

Download sequence (3.4Kb)

Get flanking sequences on SL2.50ch02

mRNA Solyc02g077260.2.1

Ontology terms

terms associated with this mRNA

GO:0005516 – calmodulin binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc02g077260.2.1	SL2.50ch02:42250819..42253742	303	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc02g077260.2	SL2.50ch02:42250446..42253914	3,469	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc02g077260.2.1.1	SL2.50ch02:42253668..42253914	247	-	n/a
exon	exon:Solyc02g077260.2.1.2	SL2.50ch02:42253377..42253544	168	-	n/a
exon	exon:Solyc02g077260.2.1.3	SL2.50ch02:42252061..42252288	228	-	n/a
exon	exon:Solyc02g077260.2.1.4	SL2.50ch02:42251230..42251343	114	-	n/a
exon	exon:Solyc02g077260.2.1.5	SL2.50ch02:42250446..42251143	698	-	n/a
intron	intron:Solyc02g077260.2.1.2	SL2.50ch02:42253545..42253667	n/a	-	n/a
intron	intron:Solyc02g077260.2.1.3	SL2.50ch02:42252289..42253376	n/a	-	n/a
intron	intron:Solyc02g077260.2.1.4	SL2.50ch02:42251344..42252060	n/a	-	n/a
intron	intron:Solyc02g077260.2.1.5	SL2.50ch02:42251144..42251229	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlSUN5 (SUN-like protein5)

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17727692%2Fdetails feature 17727692

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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