Sol Genomics Network

Solanum lycopersicum gene Solyc02g076690.2

Name Solyc02g076690.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc02g076690	Length 2,669

Description

Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain

Location(s)

SL2.50ch02:41833256..41835924

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2669

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc02g076690.2.1	SL2.50ch02:41833256..41835924	1,856	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc02g076690.2 SL2.50ch02:41835924..41833256 (sequence from reverse strand)
AACAGGATAAAGTTATAGGAGCAAGTGCACTCAAAATATCTCTCACTAGCCTCTTCAAAAATATCGTTACATAATTGTTCCATCAAATAATTCACAGATAAAAGTTTGTGCGCTTGTTCCACTTGCTAACTTTATTCATGACCATAAGGGTCATCTTTCCAAAAGCTATGTATAACACAAGAATCTCAAAGTCCTTTATTGCATTGTGTTACTAAAATAAAACATGGAAAATACACAAAAATCCTACCTTTTTCTTCTTCTTAGTTTCCCACTTTTCTTGATCTTAGCAACATTATCATCTCAAGTTTCTGCTTTTACTACTTATTTTCCAGAATTAGACAAGCCGCAAGAGTTGCTTACAGAAGAAAGAGTTTTCCAACTATTCCAAGAATGGAAACAGAAGCATGGGAAAATTTACAAGAATGAGAAAGAGGAAGAAAGGAGGTTGGAGAATTTTAAAAGGAATGTGAAGTATATAGTGGACAAGAACTCAAAGAGAAGGTCAGAATCAGACCATTTAGTTGGTTTGAACAATTTTGCTGATATGAGCAATGAAGAGTTCAGTCAAGTTCATACTTCAAAGATTAAGATGCCTTTTAAACAGCAGAACAAGACCACTATTTCTGCGAATTCATGTGATGCTCCTCCTGCTAAGGATTGGAGGAAACATGGGGTTGTCACTGAGGTTAAGAATCAAGGAGCATGTGGTAAGCTGTGCTAATCTCTTCTGCATATTAATTCAGTCTTTTCACAATTTCCCATTTTTAGAGGATCATGGTTTAAGGCTTATCATGGACATTTACTTGTAATTTACCTTATAAGTGACATGATTGTGTAAAGATCTTTTACTTTGTCACTGCATAGAGCTTAAACTCGATATTATACATGGCAGTCTTGTTTTGAACAAAAGAGAGGCACAATAGTAGCACCATTTAGTTCATAGATCTTTAGTTCCCAATTTGTTGATGCCTATTTTTATGGGGGAAAATGAGTTAAAATCAGGAGTATCACTTCCATTGTAAGCACTTTGTTGATCTAGTGGTTATCTAGTAGAAGGATGGTATAGTACCAAAGCTTCCGAGAGTTCTATCCCAAATTAGGCAGCTGAACCAATGATGCCTTGGGATATCAGTGAGCCTGAAAATATGTACCTTTTGCAAATATCTTTCATTCTCTGCATTTCAAATGCAGGATGTTGTTGGGCATTTTCCGCATGTGGAGCCATTGAAGGAATAAATGCATTGGTCACTGGTGAACTTATTAGCCTTTCAACTCAAGAACTTGTCAACTGTGACACATCTAATAAAGGGTGTGAAGGTGGACTTATGGACCCTGCTTTTAAATTTGTGATCAACAATAGGGGCATTGATTCAGCAGCTGATTATCCATACACCAAATCTCGAGGCTCTTGCAGTTACAACAAGGCATGTGATGGCTGCAATTTCCCATAACATCTTTGTTTCTTTTAGCTTTTTCATTTTTAAGAGAAAATGTTGATCATTTTTACTCAAACAGTTGAACAAGAAGGCTGTAACAATTGATGGATATCAAGATGTTGCACAAGAAGAAAGTGCCCTACTTTGTGCTGTTGCTAGACAACCTGTCAGTGTAGGCATTGATGGAAAAAGCCTTGATTTTCAGCTATATGCAGGGGTAACTCATATATATTGTTACTTCTTTCGACAAGTCCCGATATTAAGCTCTTCCCCTTTCTCTGTTTTGGGGTTAATGCGCAGGGAATCTATGATGGAGAATGCTCTAGTAATCCAGATGACTTATCCCATGCAGTACTAATTGTAGGATACGGTTCTGAAGGAGGAGTTGACTATTGGATTATCAAGAACTCATGGGGAAAATCTTGGGGCATGGAGGGGTATGCATATATAAAAAGGAACACTGTTTTGCCATATGGGATATGTGGTATTAATTCACTGGCTTCTTATCCCATGAAAGAATCGTCTTCCGCTCCACCATCCCCTCCAAAACCAAATATATGTGAAGACGGCTTACATTACTGTCCAGAAGGTCAAACATGCTGCTGCGGCTTAGATTTCTTTGGCAAGTGCTTAGTTCATGGATGCTGTCCTATTGAAAATGGTGTTTGCTGTGAGAATTCAAGATTATGCTGCCCTCAAGACTTCCCATATTGTGATGTTTTACAAGGCCTCTGCCACAAGGTATTACTTAAATCTTCAATAGCTTCTTCATATCACCGAGACATATAATCTAGTCGTACTTGTGAGGTCTTTCACACATACACACAAGTCACACCCCTTCTCCTTCCTCTTTTCTCCCAATGTAATAAGATAAAATTTCGTTTCTCTCTTTGCAGGATTATGGAGACAAAATTGGAGTTGCTGCAAGGAAGAGAACAATGGCCAAGCTCAAGCTAACATGGAGCAGTGCTACTAAGGAAATAGATGAAATGGACCAAACTTTCCAATGGAACAGGAGGAATCAGTTTGCTGTGATGCGCTGAAACAACTTATCTAAGTTATTATAGCTTTTATCATCCCAACTGGCACTCTGGTTCTTGTTGGTCAAGTAAATGTTGTAGAAAAATATGTAAAAGAAAAAATGTACAAAAATCCTTCGATTATCTATATATAACAATTTATGAAGCACAAAAAAAGAATAAATACTTGCGTTTTTGAATACAAGTATTGAAA

Download sequence region

Download sequence (2.7Kb)

Get flanking sequences on SL2.50ch02

mRNA Solyc02g076690.2.1

Ontology terms

terms associated with this mRNA

GO:0004197 – cysteine-type endopeptidase activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc02g076690.2.1 Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain
AACAGGATAAAGTTATAGGAGCAAGTGCACTCAAAATATCTCTCACTAGCCTCTTCAAAAATATCGTTACATAATTGTTCCATCAAATAATTCACAGATAAAAGTTTGTGCGCTTGTTCCACTTGCTAACTTTATTCATGACCATAAGGGTCATCTTTCCAAAAGCTATGTATAACACAAGAATCTCAAAGTCCTTTATTGCATTGTGTTACTAAAATAAAACATGGAAAATACACAAAAATCCTACCTTTTTCTTCTTCTTAGTTTCCCACTTTTCTTGATCTTAGCAACATTATCATCTCAAGTTTCTGCTTTTACTACTTATTTTCCAGAATTAGACAAGCCGCAAGAGTTGCTTACAGAAGAAAGAGTTTTCCAACTATTCCAAGAATGGAAACAGAAGCATGGGAAAATTTACAAGAATGAGAAAGAGGAAGAAAGGAGGTTGGAGAATTTTAAAAGGAATGTGAAGTATATAGTGGACAAGAACTCAAAGAGAAGGTCAGAATCAGACCATTTAGTTGGTTTGAACAATTTTGCTGATATGAGCAATGAAGAGTTCAGTCAAGTTCATACTTCAAAGATTAAGATGCCTTTTAAACAGCAGAACAAGACCACTATTTCTGCGAATTCATGTGATGCTCCTCCTGCTAAGGATTGGAGGAAACATGGGGTTGTCACTGAGGTTAAGAATCAAGGAGCATGTGGATGTTGTTGGGCATTTTCCGCATGTGGAGCCATTGAAGGAATAAATGCATTGGTCACTGGTGAACTTATTAGCCTTTCAACTCAAGAACTTGTCAACTGTGACACATCTAATAAAGGGTGTGAAGGTGGACTTATGGACCCTGCTTTTAAATTTGTGATCAACAATAGGGGCATTGATTCAGCAGCTGATTATCCATACACCAAATCTCGAGGCTCTTGCAGTTACAACAAGTTGAACAAGAAGGCTGTAACAATTGATGGATATCAAGATGTTGCACAAGAAGAAAGTGCCCTACTTTGTGCTGTTGCTAGACAACCTGTCAGTGTAGGCATTGATGGAAAAAGCCTTGATTTTCAGCTATATGCAGGGGGAATCTATGATGGAGAATGCTCTAGTAATCCAGATGACTTATCCCATGCAGTACTAATTGTAGGATACGGTTCTGAAGGAGGAGTTGACTATTGGATTATCAAGAACTCATGGGGAAAATCTTGGGGCATGGAGGGGTATGCATATATAAAAAGGAACACTGTTTTGCCATATGGGATATGTGGTATTAATTCACTGGCTTCTTATCCCATGAAAGAATCGTCTTCCGCTCCACCATCCCCTCCAAAACCAAATATATGTGAAGACGGCTTACATTACTGTCCAGAAGGTCAAACATGCTGCTGCGGCTTAGATTTCTTTGGCAAGTGCTTAGTTCATGGATGCTGTCCTATTGAAAATGGTGTTTGCTGTGAGAATTCAAGATTATGCTGCCCTCAAGACTTCCCATATTGTGATGTTTTACAAGGCCTCTGCCACAAGGATTATGGAGACAAAATTGGAGTTGCTGCAAGGAAGAGAACAATGGCCAAGCTCAAGCTAACATGGAGCAGTGCTACTAAGGAAATAGATGAAATGGACCAAACTTTCCAATGGAACAGGAGGAATCAGTTTGCTGTGATGCGCTGAAACAACTTATCTAAGTTATTATAGCTTTTATCATCCCAACTGGCACTCTGGTTCTTGTTGGTCAAGTAAATGTTGTAGAAAAATATGTAAAAGAAAAAATGTACAAAAATCCTTCGATTATCTATATATAACAATTTATGAAGCACAAAAAAAGAATAAATACTTGCGTTTTTGAATACAAGTATTGAAA

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc02g076690.2.1	SL2.50ch02:41833445..41835701	481	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc02g076690.2	SL2.50ch02:41833256..41835924	2,669	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc02g076690.2.1.1	SL2.50ch02:41835218..41835924	707	-	2
exon	exon:Solyc02g076690.2.1.2	SL2.50ch02:41834501..41834733	233	-	n/a
exon	exon:Solyc02g076690.2.1.3	SL2.50ch02:41834272..41834409	138	-	n/a
exon	exon:Solyc02g076690.2.1.4	SL2.50ch02:41833748..41834188	441	-	n/a
exon	exon:Solyc02g076690.2.1.5	SL2.50ch02:41833256..41833592	337	-	n/a
intron	intron:Solyc02g076690.2.1.2	SL2.50ch02:41834734..41835217	n/a	-	n/a
intron	intron:Solyc02g076690.2.1.3	SL2.50ch02:41834410..41834500	n/a	-	n/a
intron	intron:Solyc02g076690.2.1.4	SL2.50ch02:41834189..41834271	n/a	-	n/a
intron	intron:Solyc02g076690.2.1.5	SL2.50ch02:41833593..41833747	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc02g076690

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17727227%2Fdetails feature 17727227

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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