Sol Genomics Network

Solanum lycopersicum gene Solyc01g110020.2

Name Solyc01g110020.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g110020	Length 6,390

Description

BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region

Location(s)

SL2.50ch01:96837246..96843635

GFF source

ITAG_eugene

From BOGAS: 1

Length: 6390

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g110020.2.1	SL2.50ch01:96837246..96843635	1,156	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g110020.2 SL2.50ch01:96837246..96843635
AACTTGATAAAAAAAAATCTAATAAGGAAAAAAGAGGAGCCCTGGTGACACATCCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAATACGTCTTGGTATTTGCTAACATCTCCCCTATGGGAACTACTCCGTCTGGTAAATGTTAGTTTTCCCCTGCT

Download sequence region

Download sequence (6.3Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g110020.2.1

Ontology terms

terms associated with this mRNA

GO:0003677 – DNA binding
GO:0008270 – zinc ion binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g110020.2.1	SL2.50ch01:96837404..96843289	217	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g110020.2	SL2.50ch01:96837246..96843635	6,390	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g110020.2.1.1	SL2.50ch01:96837246..96837477	232	+	n/a
exon	exon:Solyc01g110020.2.1.2	SL2.50ch01:96837572..96837917	346	+	n/a
exon	exon:Solyc01g110020.2.1.3	SL2.50ch01:96838229..96838297	69	+	2
exon	exon:Solyc01g110020.2.1.4	SL2.50ch01:96840200..96840335	136	+	1
exon	exon:Solyc01g110020.2.1.5	SL2.50ch01:96843263..96843635	373	+	1
intron	intron:Solyc01g110020.2.1.1	SL2.50ch01:96837478..96837571	n/a	+	n/a
intron	intron:Solyc01g110020.2.1.2	SL2.50ch01:96837918..96838228	n/a	+	n/a
intron	intron:Solyc01g110020.2.1.3	SL2.50ch01:96838298..96840199	n/a	+	n/a
intron	intron:Solyc01g110020.2.1.4	SL2.50ch01:96840336..96843262	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc01g110020

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17709754%2Fdetails feature 17709754

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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