Solanum lycopersicum mRNA Solyc01g103090.2.1

mRNA details  
Name
Solyc01g103090.2.1
Type
mRNA
Length
2,701
Organism
Solanum lycopersicum
Description
Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit
Location(s)
SL2.50ch01:91755837..91764105
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0003676
  • GO:0005634
  • GO:0008270
  • GO:0000166
Length
8269
Nb exon
9
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g103090.2.1 Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit

TGACGCCTTTTCCGTTATTGAAATGACAGAACTGTGATCGCTGAATACTACTACTACTTATCATTGTAATTAACATTATTGAAACCCTAGACGTCGACGATGACGGAACCGATATCAGTCGAAGAAGACGACAAGCAAGCAACGGGACTTCAACGACGCGTCGAACCAATTTCGTCGTCGTCGGCGGAGGTTCAGATATGCAACAATCGCAAGGAGAAAAGGAAGTTGACGAAGAAGGAGAAGAGGAAGCAGAAAAGGAAGGAACTAGCTGAGAAGACGCGCCAGGAAGAGGAGGCTAAGCTGAATGATCCCGAGGAGCTTCGCAGGATTCAGCTGGAGGAAGAGGAAGAGAAGGAGAGATTAGAGAGAGAAAGGAGAGAGTTTGAGGAAAGAGAGAGGCTCTTTCTCGAAGCACTGGCTCGAAAAGAAGCTCAAGAGGTAGAAGAAGAAGAACGAAGGAGAGTGGAAGACGAGGAAGAAAAGGCAAAACAAAGCCAGGTTGCCCTTGAAAATGAGCCAGATGAAGATGTCGAGTGGGAATATGTAGAAGATGGGCCTCCCGAAATTATATGGCAAGGAAATGAGATAATTGTGAAGAGGAATAAAGTGAAAGTGAAAAAGAAGGATCAAGATCCTGTGATTGTGAAAGAGGATCCCAACAGGCCAACATCCAATCCACTGGCTCCACAATCTGAAGTCTATGCTGACTACAAGAATGCTTCTTCTCTTTCAGCACAACAGTTGTTGGAGAATGTTGCTGTTCAAACTCCAAATTTTGGAACTGAGCAGGATAAAGCTCATTGTCCTTTCCACCTAAAAACCGGGGCTTGTCGATTTGGTTCGCGCTGCAGTAGGGTTCACTTTTATCCCGATAAATCCTGCACTTTGCTCATGAAGAACATGTACTGTGGACCTGGATTTGCTTGGGAGCAGGATGAGGGGCTTGAGTATACAGATGAGGAAGTTGAATGTAGTTTTGAGGAATTTTATGAGGATGTTCACACGGAATTTTTGAAATTTGGAGAAATTATAAATTTCAAGGTGTGTAGAAACAGTTCATCTCATTTGCGAGGAAACGTTTATGTACACTACAAAGATATAGATTCTGCAGTGCTTGCTTATCATTCTATAAATGGCCGTTACTTCGCTAGCAAACAGATCACATGCGAGTTTGTTAGCGTAACCAAATGGAAGGTTGCCATATGTGGGGAATTCGTGAAATCAAAGCTTAAGTCATGCTCCCGTGGAACGGCATGCAACTTTATCCATTGTTTCCGCAATCCTGGTGGAGATTATGAATGGGCGGACTTGGATAAACCACCGCCAAGATACTGGCTTACAAAGATGGCTGCTTTGTTTGGGTATGCTGATGAGTCTGTATATGATAGACGGCTTGAACAGAAAAACTCAAAACGGATGTTGAATTCCTACAAGACGCTGGCATCTGATTCTGACAGGCATCGCTACGATTCAAGGGAGAGAAGGTCTCGCTCAAGGGAGAGCAGAAGTTCAAGGATCCACTATGATGATTATGATTTTCATAAGAGGATACATCAAGAGAGAGGCGACCGTACTGATAAAAAACAGCGTAAAATTCTTGATAAGAAACAATTTGAAGAGGGGACAGGACAACATGAAGAGGAAACAAATCAACATGGTAAAAATAGATACCACAGTAGTGACTCTGATTGGGATTTATCTGACAGAGAGAAAGAGGGAGTGAAGCGCCACCATAGCACAGGAAGAAAATCAAGAAACCACCATAATGAAAAAATGGGGCTTCAACATCGTAATGATCACATCAAAAAACGAGTTAGTGGTTCCGACTCTGGTGATGATTTGCTGGAAAAGAAGAGATACGGAGATGCAGGATCTGGTAACAGTGAGAAGGGCTCAAGACATAGCAAGGAAGATCGTAATACAGATTCCAGCAGTGAGTGGTTGGATGAGAAAAGAGACAGAAGTTCGCGTCACAAGAAAAGAAGAAGCAGTTCTAGGCGCCATAACGGTGTTCCATCATCACCTGATCGCTGGGATAAGAATAGCGGAAGCCATGATAATAATACCACTGGAGATTGGACTGCTGCTATCACAGATAAAAGAAAGCCAAGTTCTGACAAGAGGGTCCATTCAGATAGGGATCACCCTTATCACCATAATGAAGACATTGGGGAAAGAGGCCGCTGGGAACCTGATGAAGGTGCTACTGGAACACACTCTAAAAGTAGTAAGAAGTCTGTAATTGATGATTCTGAAGATCACAATGTGGAATCTGAGTTAAATGATGATGGGGACTATAGTGGTGGTACAACAAGGGGAAGTAGCCGATCAATCAATCGAAAAAGGAGGGGGAACAGTGATAGGATGGACTCTGCGAAGAAGTCAAAACGATATAAAGAGAATGACAGGGCACACAATGGAAAAGACAGGAGTTACACTGGACACTTAAGTTCGTAAGACAGCCATTGCGTTACTATTTTCACGAGGTTCATACCATATATAATCTCAGTTGTAATGCTGGAAAGAACTTGAGGATGACATTACAGGCATCAGCCATTGCTAAGTTTCAGTTTTTAGATTGTAAATATTCTACACTTGTTTGTCTGACTGAAGATAAGGTTAATTTCTGATGCCTTCTCAACTGCAGTTGGGAAAATTGCCATTTATTTCAATGGAAGAATGCAGAAATACACATTGGTCA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g103090.2.1SL2.50ch01:91756080..91764006786-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g103090.2SL2.50ch01:91755837..917641058,269-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g103090.2.1.1SL2.50ch01:91763608..91764105498-n/a
exonexon:Solyc01g103090.2.1.2SL2.50ch01:91762358..91762510153-n/a
exonexon:Solyc01g103090.2.1.3SL2.50ch01:91762095..91762232138-n/a
exonexon:Solyc01g103090.2.1.4SL2.50ch01:91761762..91761920159-n/a
exonexon:Solyc01g103090.2.1.5SL2.50ch01:91760070..9176016293-n/a
exonexon:Solyc01g103090.2.1.6SL2.50ch01:91759304..91759420117-n/a
exonexon:Solyc01g103090.2.1.7SL2.50ch01:91758909..9175898375-n/a
exonexon:Solyc01g103090.2.1.8SL2.50ch01:91758501..91758724224-1
exonexon:Solyc01g103090.2.1.9SL2.50ch01:91755837..917570801,244-n/a
intronintron:Solyc01g103090.2.1.2SL2.50ch01:91762511..91763607n/a-n/a
intronintron:Solyc01g103090.2.1.3SL2.50ch01:91762233..91762357n/a-n/a
intronintron:Solyc01g103090.2.1.4SL2.50ch01:91761921..91762094n/a-n/a
intronintron:Solyc01g103090.2.1.5SL2.50ch01:91760163..91761761n/a-n/a
intronintron:Solyc01g103090.2.1.6SL2.50ch01:91759421..91760069n/a-n/a
intronintron:Solyc01g103090.2.1.7SL2.50ch01:91758984..91759303n/a-n/a
intronintron:Solyc01g103090.2.1.8SL2.50ch01:91758725..91758908n/a-n/a
intronintron:Solyc01g103090.2.1.9SL2.50ch01:91757081..91758500n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17701542%2Fdetails feature 17701542
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