Solanum lycopersicum mRNA Solyc01g094480.2.1
 mRNA details
|
| Name | Type |
Length
1,775
|
Organism |
|
Description
Pre-mRNA-splicing factor prp46 (AHRD V1 **-- B6K7I2_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region
|
|
Location(s)
SL2.50ch01:85939842..85948054
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Length
- 8213
- Nb exon
- 17
- Sifter term
- GO:0003714
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc01g094480.2.1 Pre-mRNA-splicing factor prp46 (AHRD V1 **-- B6K7I2_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region
TGTTATATGCAAACCGCAAATTGTTGAATTATTACTTTGCAGGGAAAAGAGTTCTATATCCCGGCCATCTCCTCCCGTCGGTACAGTACGACCTCCGGCGTCGGCAGAAGAAGTAACTCTCTTACGCGGCCTCTGTAAGGCATGCCGGGTCCAACAATGGAATCAGAATTTCCAGTGGAGCCACAATCGCTGAAGAAGCTAAGCTTCAAGTCCCTTAAACGATCTCTTGACTTATTTTCACCTATCCATGGCCATTTCCCTCTTCCTGACCCTGAAAGCAAGAAAGTTCGAACGAGCTATAAGCTAAATGTCGAGTATGGAGGTATAAAAGGCTCAGCGGCTGAACCTAACGCCAAAGCGGGTGTGCAGCATCAGGCTCAACCAGCTTCTGCACCTTCCAATACCCTTGCTCTTCCAGGTCCTGAAAATACAAGAGACGAGAAAACCGGAAATGAACTGGCTCTTGGTCCATCCATACCAGGGAATGGCCCGACTGATGTTAGGTTCTCAGGGAAAAGCAATGCTGTTGTTCCTTCTCACGGTTCATCTGAAAGAAATTTGTCAACTGCTGCAATCATGGAAAGAATTCCAAGCAGATGGCCTCGTCCAATATGGCGTGCTCCATGGAAAAATTACAGGGTTATCAGTGGCCATTTGGGATGGGTGAGGTCTGTCGCAGTGGATCCTAGTAATACTTGGTTTTGTACAGGATCAGCAGATCGCACTATCAAGATATGGGATTTAGCAAGTGGAAGACTGAAGCTCACTTTAACAGGGCACATTGAACAAGTCCGAGGCCTTGCTGTTAGTAATAAACACACATACATGTTCTCTGCTGGTGATGATAAGCTAGTTAAATGCTGGGACCTGGAACAAAATAAGGTGATCCGCTCCTATCATGGCCACCTCAGCGGTGTTTATTGCTTGGCTCTTCATCCAACCATTGACATCTTGTTCACCGGGGGTCGTGATTCTGTCTGCCGGGTTTGGGATATTCGTAGCAAAATGCAAATTCATGCTCTATCTGGACATGACAATACTGTTTGTTCTGTTTTTACCAGGCCGATGGATCCACAGGTTATAACTGGCTCTCATGACAGTACCATTAAGTTCTGGGACCTTAGATATGGTAAGACAATGGCAACTCTCACACATCACAAGAAATCTGTTCGAGCTATGGCTCAGCATCCTACAGAGGATTGTTTTGCTTCTGCATCAGCAGACAACATAAAAAAGTTCAGTCTTCCAAAAGGAGAATTTATGCACAACATGCTTTCCCAACAGAAAACCATAGTCAACGCGATGGCAATTAATAATGACGGTGTAATGGTCACTGGAGGTGACAATGGAAGCATGTGGTTTTGGGATTGGAAAAGCGGTCACAATTTCCAGCAATCTCAAACTATTGTTCAACCTGGGTCACTGGACAGTGAGGCTGGCATTTATGCCCTCACCTACGATGTAACCGGCTCAAGGCTGATCAGCTGTGAAGCTGATAAGACCATCAAGATGTGGAAAGAAGACGAAACTGCTACCCCAGAAACTCATCCTCTTCACTTTAAGCCTCCAAAAGACATTAGGCGTTTCTAGTTGTAATCGTAATTCAGAAAGCAACCCTTTGTAATACATACAAATCGAACTTCTTCTGTGCGTCGTTTCGGAGTAAGACTGACCCGATAAAAGCACCATGTCCAGAGTAGTTCACTTGCCTCTTTGTATCCATCATTTACTTGTGTTTTTTATTTAGTGAAGGATTCATCTTTTTCTTCCTACCA
TGTTATATGCAAACCGCAAATTGTTGAATTATTACTTTGCAGGGAAAAGAGTTCTATATCCCGGCCATCTCCTCCCGTCGGTACAGTACGACCTCCGGCGTCGGCAGAAGAAGTAACTCTCTTACGCGGCCTCTGTAAGGCATGCCGGGTCCAACAATGGAATCAGAATTTCCAGTGGAGCCACAATCGCTGAAGAAGCTAAGCTTCAAGTCCCTTAAACGATCTCTTGACTTATTTTCACCTATCCATGGCCATTTCCCTCTTCCTGACCCTGAAAGCAAGAAAGTTCGAACGAGCTATAAGCTAAATGTCGAGTATGGAGGTATAAAAGGCTCAGCGGCTGAACCTAACGCCAAAGCGGGTGTGCAGCATCAGGCTCAACCAGCTTCTGCACCTTCCAATACCCTTGCTCTTCCAGGTCCTGAAAATACAAGAGACGAGAAAACCGGAAATGAACTGGCTCTTGGTCCATCCATACCAGGGAATGGCCCGACTGATGTTAGGTTCTCAGGGAAAAGCAATGCTGTTGTTCCTTCTCACGGTTCATCTGAAAGAAATTTGTCAACTGCTGCAATCATGGAAAGAATTCCAAGCAGATGGCCTCGTCCAATATGGCGTGCTCCATGGAAAAATTACAGGGTTATCAGTGGCCATTTGGGATGGGTGAGGTCTGTCGCAGTGGATCCTAGTAATACTTGGTTTTGTACAGGATCAGCAGATCGCACTATCAAGATATGGGATTTAGCAAGTGGAAGACTGAAGCTCACTTTAACAGGGCACATTGAACAAGTCCGAGGCCTTGCTGTTAGTAATAAACACACATACATGTTCTCTGCTGGTGATGATAAGCTAGTTAAATGCTGGGACCTGGAACAAAATAAGGTGATCCGCTCCTATCATGGCCACCTCAGCGGTGTTTATTGCTTGGCTCTTCATCCAACCATTGACATCTTGTTCACCGGGGGTCGTGATTCTGTCTGCCGGGTTTGGGATATTCGTAGCAAAATGCAAATTCATGCTCTATCTGGACATGACAATACTGTTTGTTCTGTTTTTACCAGGCCGATGGATCCACAGGTTATAACTGGCTCTCATGACAGTACCATTAAGTTCTGGGACCTTAGATATGGTAAGACAATGGCAACTCTCACACATCACAAGAAATCTGTTCGAGCTATGGCTCAGCATCCTACAGAGGATTGTTTTGCTTCTGCATCAGCAGACAACATAAAAAAGTTCAGTCTTCCAAAAGGAGAATTTATGCACAACATGCTTTCCCAACAGAAAACCATAGTCAACGCGATGGCAATTAATAATGACGGTGTAATGGTCACTGGAGGTGACAATGGAAGCATGTGGTTTTGGGATTGGAAAAGCGGTCACAATTTCCAGCAATCTCAAACTATTGTTCAACCTGGGTCACTGGACAGTGAGGCTGGCATTTATGCCCTCACCTACGATGTAACCGGCTCAAGGCTGATCAGCTGTGAAGCTGATAAGACCATCAAGATGTGGAAAGAAGACGAAACTGCTACCCCAGAAACTCATCCTCTTCACTTTAAGCCTCCAAAAGACATTAGGCGTTTCTAGTTGTAATCGTAATTCAGAAAGCAACCCTTTGTAATACATACAAATCGAACTTCTTCTGTGCGTCGTTTCGGAGTAAGACTGACCCGATAAAAGCACCATGTCCAGAGTAGTTCACTTGCCTCTTTGTATCCATCATTTACTTGTGTTTTTTATTTAGTGAAGGATTCATCTTTTTCTTCCTACCA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc01g094480.2.1 | SL2.50ch01:85939982..85947869 | 483 | + | n/a |
Add items to a list:
| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc01g094480.2 | SL2.50ch01:85939842..85948054 | 8,213 | + | n/a |
Add items to a list:
| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc01g094480.2.1.1 | SL2.50ch01:85939842..85940119 | 278 | + | n/a |
| exon | exon:Solyc01g094480.2.1.10 | SL2.50ch01:85945184..85945285 | 102 | + | 2 |
| exon | exon:Solyc01g094480.2.1.11 | SL2.50ch01:85945422..85945505 | 84 | + | n/a |
| exon | exon:Solyc01g094480.2.1.12 | SL2.50ch01:85946815..85946875 | 61 | + | n/a |
| exon | exon:Solyc01g094480.2.1.13 | SL2.50ch01:85946974..85947040 | 67 | + | n/a |
| exon | exon:Solyc01g094480.2.1.14 | SL2.50ch01:85947133..85947210 | 78 | + | 2 |
| exon | exon:Solyc01g094480.2.1.15 | SL2.50ch01:85947337..85947401 | 65 | + | 1 |
| exon | exon:Solyc01g094480.2.1.16 | SL2.50ch01:85947542..85947619 | 78 | + | 1 |
| exon | exon:Solyc01g094480.2.1.17 | SL2.50ch01:85947697..85948054 | 358 | + | 2 |
| exon | exon:Solyc01g094480.2.1.2 | SL2.50ch01:85940286..85940310 | 25 | + | n/a |
| exon | exon:Solyc01g094480.2.1.3 | SL2.50ch01:85940507..85940621 | 115 | + | 1 |
| exon | exon:Solyc01g094480.2.1.4 | SL2.50ch01:85941315..85941387 | 73 | + | n/a |
| exon | exon:Solyc01g094480.2.1.5 | SL2.50ch01:85941539..85941601 | 63 | + | 2 |
| exon | exon:Solyc01g094480.2.1.6 | SL2.50ch01:85942694..85942778 | 85 | + | 1 |
| exon | exon:Solyc01g094480.2.1.7 | SL2.50ch01:85943551..85943643 | 93 | + | 1 |
| exon | exon:Solyc01g094480.2.1.8 | SL2.50ch01:85944837..85944900 | 64 | + | n/a |
| exon | exon:Solyc01g094480.2.1.9 | SL2.50ch01:85945016..85945101 | 86 | + | n/a |
| intron | intron:Solyc01g094480.2.1.1 | SL2.50ch01:85940120..85940285 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.10 | SL2.50ch01:85945286..85945421 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.11 | SL2.50ch01:85945506..85946814 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.12 | SL2.50ch01:85946876..85946973 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.13 | SL2.50ch01:85947041..85947132 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.14 | SL2.50ch01:85947211..85947336 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.15 | SL2.50ch01:85947402..85947541 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.16 | SL2.50ch01:85947620..85947696 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.2 | SL2.50ch01:85940311..85940506 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.3 | SL2.50ch01:85940622..85941314 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.4 | SL2.50ch01:85941388..85941538 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.5 | SL2.50ch01:85941602..85942693 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.6 | SL2.50ch01:85942779..85943550 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.7 | SL2.50ch01:85943644..85944836 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.8 | SL2.50ch01:85944901..85945015 | n/a | + | n/a |
| intron | intron:Solyc01g094480.2.1.9 | SL2.50ch01:85945102..85945183 | n/a | + | n/a |
Add items to a list:
| Related views |
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
