Solanum lycopersicum mRNA Solyc01g088100.2.1

mRNA details  
Name
Solyc01g088100.2.1
Type
mRNA
Length
2,915
Organism
Solanum lycopersicum
Description
Zinc finger CCCH domain-containing protein 22 (AHRD V1 ***- C3H22_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type
Location(s)
SL2.50ch01:82960407..82964642
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0003676
  • GO:0008270
  • GO:0000166
Length
4236
Nb exon
10
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g088100.2.1 Zinc finger CCCH domain-containing protein 22 (AHRD V1 ***- C3H22_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type

GCTGTCAAGCTGGTGCTGCTACTAGTACTGCTGCTTCTTGCAGGCTGCATAGAAATAGAGAGGGCGGTGGTTTAAGTTCTTTTCTTTTGCAGTTTGTTAACAAAGGGGAAAATTTGATCAAAGTGGAAAAAAAGAGGAAGTGAAAAAGAGTCATCTTTTTATGGGAAGAGTAAGAGAAAGGAGTTTACTTGAATCTTGTTAAGAAATTGCTAGTTGGTGGTGGAAAAAAGAGGAATTTTTTTCTTCTTATTGACAGTCTGTACTTTAGGAAAGACAAAAAGGAAGGTTGGAGTTTGAATCTACTAGAGAGGAAGGAAGTTATGGATGCTTATGAAGCTACAAAAATTGTTTTTCAAAGGATTCAAAGTTTGGATCCTGAAAATGCATCAAAAATTATGGGGATTCTTCTGATGCAAGACCATGGTGAGAAAGAAATGATTCGATTAGCTTTTGGTCCAGAAGCTTTAGTTCACTCGGTGATTCTTAAAGCAAGAAAGGAGCTTGGTGTTTCTTCAAACTCACCTTCTACACCTTCAACTCCTTCTTCACCTTCACCTTTTGGTGGTTCAATGTGTTTTTCAAGGCAGAATTCTTCTTCTTCAGCTACTTCTGGTAGGATTCTTGGGGGTCTTAGCCTTCCTTCACCTCTTAGCATAACTAGTAACAACAACCACTCTTCAAATGTTTCTGCTTCTTGGAGTACTAGTCCTAGTTTCTCTGAGTTTCAAGAAGCTGATCTTGTTAGTCCTAGTGCTTCCAACATCTCATATACTGCTGCTACTACTACTAATGGAATGACCAATTCCACCATGAATTCCTCAGCTCCTCCCTTTTATTGCAATGGTGAAGTAGACTTGATAGATGAGTTTCAACTACAGGACCAGCTTTCTTTCTTGAATGATGGGTCACCAACCTTGGGGCCTAAGAATCCTGATGTTTATTACCAGCAACAGCAGCAACAACAAGATTTAGCCTCAAGTCCAAGTGGGGATTCCATGCTTTTCTCTTCATATAACTGGGGTGGTGGATGCAACTCAGTCAACGGCCTCTCTCATAGAAGGAGCTGCTCTGTGAGTGATATATGCTTGGGGGCTGATGACCCAAGTGGAGGACTTGGCTGGAAACCTTGTCTCTATTTTGCTAGAGGGTATTGCAAGAATGGAAGTAGCTGTAGGTTCCTTCATGGTGCTGGGCCTGGTGAAGGTGAAGTTGGGTCACCAAACAAGTTTGAGATGATGGAACATTGCCAAGAACTTCTCAGATCTAAGTCTGCTCACCAGCAAAGACTAGCCACAGCTTCTCAGCTCATGGCTTCTTCTAACTTTCCTCTCTCTCCCATGGCTGCTAACAAATGCATGAACTTTCTTCAGCAGCAACAGTTGCAGTCTGCTGAAAGCCCAAGGGCAGCTGCTGCATTGATGATGGGTGATGACATGCATAAATTGAGCAGAAGTCGTTTTGAAAGAGGGGATTTTGGACTGAATGGTGGAGTTGGAATAGCAAATCCAGGTTCAAGGCAAATTTACTTGACATTTCCAGCTGATAGTACTTTCAAAGAAGAGGATGTTTCCAATTATTTCAGCACTTATGGGCCTGTTCAAGATGTGAGGATTCCATATCAGCAAAAGAGGATGTTTGGTTTTGTTACATTTGTTTATCCAGAGACTGTGAAGACCATTCTTGCCAAAGGAAATCCTCATTTTGTATGTGATGCTAGGGTGCTTGTCAAGCCTTACAAAGAGAAGGGCAAAGTCCCAGAGAAGTTTAGGAAGCAACACCAACAGCAGATGGAGAGGGGAGAATTCACTGGATGCGGTAGTCCTACTGGTCTGGACTCCAGTGATCCTTATGATCTTCAGCTTGGTGCAAGAATGTTTTACAACACTCAAGATGCGCTGTGGAGGAGAAAATTGGAAGAACAAGCTGATCTGCAACAGGCAATTGAGCTCCAAAGCAGGAGATTGCTGAATTTACAGCTTCTTGATGTCAAAAGGAGCAACCATCATCGTGCCCTTTCCATGAGTGCTGTTATCCCATCCCCACCGCATTCTCCAGGCTTCTTCAATCAGAATATGGTTCGCTCCACAGACTTTGGCAGCCGAGAAGAGAATGGTTTTGCACCAAAAATGGTCAATTTTGCTGCTGTTACTGCTGAGCAAAAGAATGCAAATCTTACTGCCAAGGAGAGAGAATGCTTCACAGGTAAAGATGAAAATAGCAGTGGCAAAGAAAGTTCCAAGAAGGAAGCAAGTGATTTTCAAGAAAGCTTGGAGCATAATCTCCCAGATAGTCCATTTGCATCACCTAAAGCAGTTGGGGACTTCATCACAACTTTCTCAAATGAAGCTGCTGGAGATGTTGACAAAGGTGCTGGATTAAATGCATCATCCTCTGCTAACAATAATATGATCCCTTCTTCCTCCTTGTCAACTAGTACTCTAGACATGACTCCTTTCAAATCATGTTACTTCCAAGTGCCTAGGTTCCCTTCCGGACATGGCACCATTGGAATGTAGGCCTGGACAGCATGTTATGTTACGTAGTTTAGCTTCCTTAGTTTAGGAAGGAAAGAAAGAACGATGACGACCGTAACCAAACCCTAAAACAAAAAAAATTACTACTCTCAAGAAGCAAGCTCAGCATCAGCCAGGAAAATACATACTACTACTATTACTACTATAGAAAATATGCATAAATACATAAAAAAAAAAGAAAAAGGATGTGTGTGACAGCCATGTTGAATGTATTTTCAGTGTCTTTTTCCCATATCTCTCCTTTAGTTGAGGCTGGATTCACATGTTAAAGAAAAAGGATAATTAGCCATAGGTACAAAGAAGTAAAAAATCCAAAGCATCACTTGTAATCCTTTACCTAAGTAAGCATATTATTGGGTGTCCACTTGTGTACTTAATGAC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g088100.2.1SL2.50ch01:82960939..82964110732+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g088100.2SL2.50ch01:82960407..829646424,236+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g088100.2.1.1SL2.50ch01:82960407..82960570164+n/a
exonexon:Solyc01g088100.2.1.10SL2.50ch01:82964290..82964642353+1
exonexon:Solyc01g088100.2.1.2SL2.50ch01:82960784..829620211,238+n/a
exonexon:Solyc01g088100.2.1.3SL2.50ch01:82962117..82962296180+n/a
exonexon:Solyc01g088100.2.1.4SL2.50ch01:82962389..82962574186+1
exonexon:Solyc01g088100.2.1.5SL2.50ch01:82962664..8296275895+1
exonexon:Solyc01g088100.2.1.6SL2.50ch01:82962862..82963104243+1
exonexon:Solyc01g088100.2.1.7SL2.50ch01:82963243..82963402160+2
exonexon:Solyc01g088100.2.1.8SL2.50ch01:82963587..82963802216+2
exonexon:Solyc01g088100.2.1.9SL2.50ch01:82964077..8296415680+1
intronintron:Solyc01g088100.2.1.1SL2.50ch01:82960571..82960783n/a+n/a
intronintron:Solyc01g088100.2.1.2SL2.50ch01:82962022..82962116n/a+n/a
intronintron:Solyc01g088100.2.1.3SL2.50ch01:82962297..82962388n/a+n/a
intronintron:Solyc01g088100.2.1.4SL2.50ch01:82962575..82962663n/a+n/a
intronintron:Solyc01g088100.2.1.5SL2.50ch01:82962759..82962861n/a+n/a
intronintron:Solyc01g088100.2.1.6SL2.50ch01:82963105..82963242n/a+n/a
intronintron:Solyc01g088100.2.1.7SL2.50ch01:82963403..82963586n/a+n/a
intronintron:Solyc01g088100.2.1.8SL2.50ch01:82963803..82964076n/a+n/a
intronintron:Solyc01g088100.2.1.9SL2.50ch01:82964157..82964289n/a+n/a
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Related viewsNone found
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