Solanum lycopersicum mRNA Solyc01g087990.2.1
 mRNA details
|
| Name | Type |
Length
1,332
|
Organism |
|
Description
MADS-box transcription factor 3 (AHRD V1 ***- D3U2H2_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
|
|
Location(s)
SL2.50ch01:82829848..82836054
|
| Ontology term(s) |
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GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0005634
- Length
- 6207
- Sifter term
- GO:0005515
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc01g087990.2.1 MADS-box transcription factor 3 (AHRD V1 ***- D3U2H2_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
GACTTCACGTCTCTCTATCTTCTCTTTCTCTATATAGCAATTTTTTCTTTTTTCCTCTTCTTTTAGCATTAACCAAAAACCCCTCTTCCTAATTTCTTCTTCTTCTTCCCAAAAATAAATCCCCAAAAAAACAGATACAGGAGGAGGAAATTAAAGAGGGGAAGGGAAAAAAATTCATCAAAGACTTGTCTTTTGGTTGTTTTTTTTTTTCATATAGTTTAAGGGAAAAGAGAAGATGGGTAGAGGAAAAATTGACATAAAATTGATTGAGAATCTAAATAATAGACAAGTAACATTTTCTAAGAGGCGTGCTGGCTTGTTGAAGAAAGCCGGGGAGCTTTCTGTTCTTTGTGATTCTGAAGTTGCTGTTATTATTTTCTCAAGTACTGGAAAGCTTTTTGAGTTTTCAAGTACTAGCATGAAACAGACGCTTTCCAGATACAACAAATGTGTAGCCTCGACAGATAATTCTGCCGTAGAAAAGAAGTCAGAGGACAACGAGCAGCCACAGTTGCAGCAGCAGACACATGTGCTGAAGCAGGAACAAAAAGAGGTGGACAGTCTTAAAGACGAACTCGCAAAGCTCAAGATGAAACAACAGCGGTTGTTAGGCAAGGACCTTAATGGTATGGGTTTGAATGAGCTACGGCTTCTTGAACATCAACTAAATGAAGGACTACTAGCCATAAAGGAGAGAAAGGAGGAATTGCTGATACAGCAACTAGAGTATTCTAGGAAACAGGAGGAGAGGTCTGCGCTGGAGTGTGAGACCTTACGTAGACAGGTAGAAGAGCTCCGAGGGTTATTTCCTTTAAGTGCTAGTTTACCGCCACCTTTTCTTGAATATGATCGCCCATTGGAAAAGAAGTATTCAATTTTAAAAGAGAGTAAGGAGAGTCTGGATTCCGACACTGCATGTGAAGATGGAGTAGATGATGAAGATTCCAACACAACTTTGCAATTGGGGCTTCCAACTATTTGTCGAAAGAGAAAGAGAACAGAGCAGGAATCTCCTTCAAGCAATTCAGAGAATCAAGTTGGCTCAAAGTGACTATTGTCTTTCGGGACTCATCCCCCCTCCTTTGTAACTTGTTAGGCACATGTCAGGTTAAATGATATTGAACCAGTTTTCATGTTTAAAACAGGTTCATCTAGACCAGTGATTTTGTCAGGGACTTAGATGGCTTAAGTAAGATAAAGATGCTGGTTTCATTTTGATTTTGAACAATATCTCTGGACAGTGTATTTTAAGATGGAGATGAGTTCAGCTCTCCATTTTTACTGATTATGAATCTGAATCTGAATCATTTAGTCAGGTCAGTGCTTTTCGAA
GACTTCACGTCTCTCTATCTTCTCTTTCTCTATATAGCAATTTTTTCTTTTTTCCTCTTCTTTTAGCATTAACCAAAAACCCCTCTTCCTAATTTCTTCTTCTTCTTCCCAAAAATAAATCCCCAAAAAAACAGATACAGGAGGAGGAAATTAAAGAGGGGAAGGGAAAAAAATTCATCAAAGACTTGTCTTTTGGTTGTTTTTTTTTTTCATATAGTTTAAGGGAAAAGAGAAGATGGGTAGAGGAAAAATTGACATAAAATTGATTGAGAATCTAAATAATAGACAAGTAACATTTTCTAAGAGGCGTGCTGGCTTGTTGAAGAAAGCCGGGGAGCTTTCTGTTCTTTGTGATTCTGAAGTTGCTGTTATTATTTTCTCAAGTACTGGAAAGCTTTTTGAGTTTTCAAGTACTAGCATGAAACAGACGCTTTCCAGATACAACAAATGTGTAGCCTCGACAGATAATTCTGCCGTAGAAAAGAAGTCAGAGGACAACGAGCAGCCACAGTTGCAGCAGCAGACACATGTGCTGAAGCAGGAACAAAAAGAGGTGGACAGTCTTAAAGACGAACTCGCAAAGCTCAAGATGAAACAACAGCGGTTGTTAGGCAAGGACCTTAATGGTATGGGTTTGAATGAGCTACGGCTTCTTGAACATCAACTAAATGAAGGACTACTAGCCATAAAGGAGAGAAAGGAGGAATTGCTGATACAGCAACTAGAGTATTCTAGGAAACAGGAGGAGAGGTCTGCGCTGGAGTGTGAGACCTTACGTAGACAGGTAGAAGAGCTCCGAGGGTTATTTCCTTTAAGTGCTAGTTTACCGCCACCTTTTCTTGAATATGATCGCCCATTGGAAAAGAAGTATTCAATTTTAAAAGAGAGTAAGGAGAGTCTGGATTCCGACACTGCATGTGAAGATGGAGTAGATGATGAAGATTCCAACACAACTTTGCAATTGGGGCTTCCAACTATTTGTCGAAAGAGAAAGAGAACAGAGCAGGAATCTCCTTCAAGCAATTCAGAGAATCAAGTTGGCTCAAAGTGACTATTGTCTTTCGGGACTCATCCCCCCTCCTTTGTAACTTGTTAGGCACATGTCAGGTTAAATGATATTGAACCAGTTTTCATGTTTAAAACAGGTTCATCTAGACCAGTGATTTTGTCAGGGACTTAGATGGCTTAAGTAAGATAAAGATGCTGGTTTCATTTTGATTTTGAACAATATCTCTGGACAGTGTATTTTAAGATGGAGATGAGTTCAGCTCTCCATTTTTACTGATTATGAATCTGAATCTGAATCATTTAGTCAGGTCAGTGCTTTTCGAA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc01g087990.2.1 | SL2.50ch01:82830128..82835819 | 272 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc01g087990.2 | SL2.50ch01:82829848..82836054 | 6,207 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc01g087990.2.1.1 | SL2.50ch01:82835638..82836054 | 417 | - | 1 |
| exon | exon:Solyc01g087990.2.1.2 | SL2.50ch01:82833107..82833182 | 76 | - | n/a |
| exon | exon:Solyc01g087990.2.1.3 | SL2.50ch01:82831251..82831357 | 107 | - | 1 |
| exon | exon:Solyc01g087990.2.1.4 | SL2.50ch01:82831075..82831174 | 100 | - | n/a |
| exon | exon:Solyc01g087990.2.1.5 | SL2.50ch01:82830881..82830922 | 42 | - | n/a |
| exon | exon:Solyc01g087990.2.1.6 | SL2.50ch01:82830698..82830739 | 42 | - | n/a |
| exon | exon:Solyc01g087990.2.1.7 | SL2.50ch01:82830402..82830583 | 182 | - | 1 |
| exon | exon:Solyc01g087990.2.1.8 | SL2.50ch01:82829848..82830213 | 366 | - | n/a |
| intron | intron:Solyc01g087990.2.1.2 | SL2.50ch01:82833183..82835637 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.3 | SL2.50ch01:82831358..82833106 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.4 | SL2.50ch01:82831175..82831250 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.5 | SL2.50ch01:82830923..82831074 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.6 | SL2.50ch01:82830740..82830880 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.7 | SL2.50ch01:82830584..82830697 | n/a | - | n/a |
| intron | intron:Solyc01g087990.2.1.8 | SL2.50ch01:82830214..82830401 | n/a | - | n/a |
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