Sol Genomics Network

Solanum lycopersicum gene Solyc01g086640.2

Name Solyc01g086640.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g086640	Length 3,827

Description

Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant

Location(s)

SL2.50ch01:81617878..81621704

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3827

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g086640.2.1	SL2.50ch01:81617878..81621704	2,162	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g086640.2 SL2.50ch01:81617878..81621704
TAAGAACAAAAAAGAACCCATTAGCCATCTGACACACCTTCTCTGACTTGTACCATTTTTCATCCAATACTAAACGCGCATTGATCATTGTATTTCGTGTTTCTGCCGATCATTTCCACCATTTCTTTTTCAGAAACTTTCTTAGAAAGTCTCTGAGAAAATCATGTTTTAAATAAACAAAAAAAACAGAGCATTTTTTTCTCACTATTTTTGTGTTTCTTGAGGTGAAGAAGCCATTTGTTTGTGAAGAAATGGCAGTGTCAAAAACTAACAAGAAGAAGCAGCAGTGTTACATAGCAGTACCATCTCAAATAATAAATTCAATTTCTTCTTCAGGGCTTCAGTCTCTGTTACTGTCTCCAAAGAAAAAGAACCCATCTTTTTCTGTAAAGCTCAAACTTTTGCTTAATAATCCAAGATTCTGGGTTTTGTTTCTTTTTGTTTTTGGGTTTGTTGGTATGTTGAAGTTATGGTTCAATTTTGAAACTTTACTTCCTTTTGCACCAAACCCATGTGGGATTTTTCAAGAAAAGACTTCATTTTTAAATGACCATCAAGTTTCTCAGCTCAGTATTGGAGCTCTGAATCTTGGAAATGGAGAAAAAGAAGAAGAAGGGGATGAAAAGAATGAGTTTTGGAAACAACCTGATGGGTTGGGTTATAAGCCTTGTTTGGATTTTAGTTCAGAGTATAGAAAAACAAGTTCGGATATTGTTAAAGGAAGGACTAGGTATTTGATGGTTGTGGTTTCTGGTGGAATGAATCAGCAGAGAAATCAGATTGTTGATGCTGTGGTGATTGCTAGGATTCTTGGTGCTGCTCTTGTTGTTCCCATTTTGCAAGTTAATGTCATCTGGGGTGATGAAAGGTTTGGCTTTTCTTGAATTCTTCTTTATTTCCAGCTCACAAGTTCTGTTATTACTGTTTAATTATCTGTACTTAGGCAACTCTTGTTGAACTTGACTTAACTTCTAATTTTGGAGTTTGAATAGTTAGTTAGTCCAATTTCATCTATTTGAGAACATCAATTTATAGAAATGTTTCAATAGTTTGGTGGATAACTTGTTATTTACTTAGTGTAACATTGTATATGGTTTTAATAAGTTAGATCTCTATGCTATTCTAAGGTGTTTTTGATTTCTTAGCTTATGTTCTTTGTTGGTTTTTGGTTGCAGTGAGTTCTCCGATATATTTGACTTGGATCACTTTAAGGAAGTATTAGCAAATGATGTAAGAATAGTTTCATCACTTCCGTCAACGCACGTAATGACTAGACCTGTGGAGGAGAAAAGGACTCCTCTCCATGCCTCCCCCGAATGGATTCGTTCACATTATACCAGAAAGGTAAAGAGGAATCAATTCAATTAACCTATGAAGTTATTACTTTCCTGGTTTTGGTTCAATAATAAGGACCACTCCTTTAATGGATGGTCCAACAGCCTAATATAATTGAAAGCAAGAGAACAGAAATGGGAAGTGAAAATGATTAAATGGTTTTATTTTCTTTGGGAATTGATGTTCATTGTATGATGGATGGTCTTTACTCTTTAGCATGTTCAAGTTAAACTTGATGGCTATTGAAATTTCTATTGTGGTTAGAGACAATCAAGATTGCTTGTTTATTTGGTTAATACTAAAGTTGATATCTTTGGAAGATATTGAAATAGTATCTTTTAAGTTGGACAAAGTCTTGAAATTGACTACATGGCAGCTGGAATTAATTTCTACACTCTTTGATTGATACCTAAACCAAAAAAATGCAAATACCAACTCAACTCTTCTAGACTTGTTTATAAGGATATTTACTTGTGTTTTTTCGGAAACAATATCTCTACCCCACAAAGATAAGGGTATGGTTTGCGTACATTCCCACTTGTGGGAAAATATTGATTATGTTGTTGTTGTTTGTTTTTATCTAAGAGGAGTGGTTGGTGAATTGAAGTTGAACCAAGTTTTGGGATATCACAGAGGATCTTATTTTGATTGTTGAATTGATCTTCTTGCAGCTTAGGAGGGATGGTGTTCTACTTTTGCGAAGCCTTGACTCAAGGCTTTCTAAGGATCTTCCTTCTGATCTTCAAAAACTTCGTTGCAAGGTAAATTTAATCCTCCTTGTCCTGTAACTGAGTTTAATTTAGACCACTCAAAGATTACGCAATGGTTTTTAATGGAATAATGAAAACTAAATCTTTTATGGGACATTTGCTTCACGAGAAAGTGATACATGAAATGCAATACGGCAACAATAATAACTAGATTATCTGATTTGTCATCGGATGTTTTTTTTTTAATCGTAGACATGGACATACCATGTATTGCAGTCTAGGACATGTCACTTTCTATAAATAGGGCAAAGTTTGTTTGCAATAATAACCTGGTCCTATTTAACTAACTCTGTCTAATGCTTTGTTGTTATATGTAATTATTCGAATAAAACAGCTCTCTAAATTTAGGAACTTTGCCTTTTTTATGTTGTATAACTAATTTATTTATACCCACTACTAATTTTTATAGGAACCCCACCTAATTCCTTCTGTTGGCATTAGCATTCAATTTGACAAAATACTGATTTGTGATCTTGTAGGTGGCGTTTCATGCTTTAAGGTTTTCGCCATCAATCTTAGAACTTGGTAACAAACTTACTGAGAGAATGAGGAGCAAGGGACCATATGTTGCTCTTCATTTGAGAATGGAGAAGGATGTGTGGGTGAGAACAGGATGTCTTCCTGGTTTAAGCCATGAGATTGATGAGATGATAAATAATGAGAGGAAGCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTGGAGGTTACAAGGTTAGCATATATTAGCCTTCATGTATTTCCTTGTTTTGTTGTTGCACTTGAAAATACTTCCCTACTTAACAAATTTACGTTCTTTTGATTAGGTTGCTCAAAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAAGAAGCATTGCAACCATTGACAAGTGAATTCCCTCACTTTTTTAACAAAGAGGATCTTGCGTTGCCCGGGGAACTTGAGCCATTTTCCAAGAAAGCATCCCTTATGGCTGCTCTCGACTACATAGTAACCGAAAATAGCAATGTTTTCATGCCATCTCATGGTGGAAACATGGGACATGCTCTCCAGGTATTGATTCTCCTTCCACTATACTTCACTTTCTTGAACAGAATAATGCTAATAGGATTATCTGAACATGTCTGAGCTTTTCTCTAACTATTGGCTGTATTTTACTTTTTCAATAGGGACAAAGGGCCTATGCAGGGCACAAAAAGACTATCACTCCCAACAAAAGACAGATGCTTCGACATTTTCTGAACTCATCACTTTCTGAAACAGAATTCAACAGAATAATACTGGACTTGCATAGAGATTCCTTAGGTCAGCCAGAATTGAGGAAACCAGGAAGGGATGTAACAAAGTACCCTGTCCCAGAGTGCATGTGCAATGGTACTATGAACCATTCATCGACATAACTCCATATCGGTGAAATAACATGTGATGAAGCACCCCTGCAGCTAATCATACATTCTTACAACATCCTGAGAACTTTGGATTAAGCCTCACTGTGATTCAGACGAGCAGACGGGGTTGGTAGAGGTGCAATACAATTTTTTTCGACTATGTTTAGAGGTGAATCCTTGGTGGTTATAACTTGTGGTAACATGAGACTGATGCAACAGAACTGGGAAAATGAATCTCTAATACAAAAGCAACATCTTATACAAGTCCAATCC

Download sequence region

Download sequence (3.8Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g086640.2.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g086640.2.1 Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant
TAAGAACAAAAAAGAACCCATTAGCCATCTGACACACCTTCTCTGACTTGTACCATTTTTCATCCAATACTAAACGCGCATTGATCATTGTATTTCGTGTTTCTGCCGATCATTTCCACCATTTCTTTTTCAGAAACTTTCTTAGAAAGTCTCTGAGAAAATCATGTTTTAAATAAACAAAAAAAACAGAGCATTTTTTTCTCACTATTTTTGTGTTTCTTGAGGTGAAGAAGCCATTTGTTTGTGAAGAAATGGCAGTGTCAAAAACTAACAAGAAGAAGCAGCAGTGTTACATAGCAGTACCATCTCAAATAATAAATTCAATTTCTTCTTCAGGGCTTCAGTCTCTGTTACTGTCTCCAAAGAAAAAGAACCCATCTTTTTCTGTAAAGCTCAAACTTTTGCTTAATAATCCAAGATTCTGGGTTTTGTTTCTTTTTGTTTTTGGGTTTGTTGGTATGTTGAAGTTATGGTTCAATTTTGAAACTTTACTTCCTTTTGCACCAAACCCATGTGGGATTTTTCAAGAAAAGACTTCATTTTTAAATGACCATCAAGTTTCTCAGCTCAGTATTGGAGCTCTGAATCTTGGAAATGGAGAAAAAGAAGAAGAAGGGGATGAAAAGAATGAGTTTTGGAAACAACCTGATGGGTTGGGTTATAAGCCTTGTTTGGATTTTAGTTCAGAGTATAGAAAAACAAGTTCGGATATTGTTAAAGGAAGGACTAGGTATTTGATGGTTGTGGTTTCTGGTGGAATGAATCAGCAGAGAAATCAGATTGTTGATGCTGTGGTGATTGCTAGGATTCTTGGTGCTGCTCTTGTTGTTCCCATTTTGCAAGTTAATGTCATCTGGGGTGATGAAAGTGAGTTCTCCGATATATTTGACTTGGATCACTTTAAGGAAGTATTAGCAAATGATGTAAGAATAGTTTCATCACTTCCGTCAACGCACGTAATGACTAGACCTGTGGAGGAGAAAAGGACTCCTCTCCATGCCTCCCCCGAATGGATTCGTTCACATTATACCAGAAAGCTTAGGAGGGATGGTGTTCTACTTTTGCGAAGCCTTGACTCAAGGCTTTCTAAGGATCTTCCTTCTGATCTTCAAAAACTTCGTTGCAAGGTGGCGTTTCATGCTTTAAGGTTTTCGCCATCAATCTTAGAACTTGGTAACAAACTTACTGAGAGAATGAGGAGCAAGGGACCATATGTTGCTCTTCATTTGAGAATGGAGAAGGATGTGTGGGTGAGAACAGGATGTCTTCCTGGTTTAAGCCATGAGATTGATGAGATGATAAATAATGAGAGGAAGCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTGGAGGTTACAAGGTTGCTCAAAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAAGAAGCATTGCAACCATTGACAAGTGAATTCCCTCACTTTTTTAACAAAGAGGATCTTGCGTTGCCCGGGGAACTTGAGCCATTTTCCAAGAAAGCATCCCTTATGGCTGCTCTCGACTACATAGTAACCGAAAATAGCAATGTTTTCATGCCATCTCATGGTGGAAACATGGGACATGCTCTCCAGGGACAAAGGGCCTATGCAGGGCACAAAAAGACTATCACTCCCAACAAAAGACAGATGCTTCGACATTTTCTGAACTCATCACTTTCTGAAACAGAATTCAACAGAATAATACTGGACTTGCATAGAGATTCCTTAGGTCAGCCAGAATTGAGGAAACCAGGAAGGGATGTAACAAAGTACCCTGTCCCAGAGTGCATGTGCAATGGTACTATGAACCATTCATCGACATAACTCCATATCGGTGAAATAACATGTGATGAAGCACCCCTGCAGCTAATCATACATTCTTACAACATCCTGAGAACTTTGGATTAAGCCTCACTGTGATTCAGACGAGCAGACGGGGTTGGTAGAGGTGCAATACAATTTTTTTCGACTATGTTTAGAGGTGAATCCTTGGTGGTTATAACTTGTGGTAACATGAGACTGATGCAACAGAACTGGGAAAATGAATCTCTAATACAAAAGCAACATCTTATACAAGTCCAATCC

Download sequence (2.2Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g086640.2.1	SL2.50ch01:81618128..81621443	550	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g086640.2	SL2.50ch01:81617878..81621704	3,827	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g086640.2.1.1	SL2.50ch01:81617878..81618745	868	+	n/a
exon	exon:Solyc01g086640.2.1.2	SL2.50ch01:81619053..81619221	169	+	n/a
exon	exon:Solyc01g086640.2.1.3	SL2.50ch01:81619884..81619973	90	+	1
exon	exon:Solyc01g086640.2.1.4	SL2.50ch01:81620462..81620745	284	+	n/a
exon	exon:Solyc01g086640.2.1.5	SL2.50ch01:81620838..81621096	259	+	n/a
exon	exon:Solyc01g086640.2.1.6	SL2.50ch01:81621213..81621704	492	+	1
intron	intron:Solyc01g086640.2.1.1	SL2.50ch01:81618746..81619052	n/a	+	n/a
intron	intron:Solyc01g086640.2.1.2	SL2.50ch01:81619222..81619883	n/a	+	n/a
intron	intron:Solyc01g086640.2.1.3	SL2.50ch01:81619974..81620461	n/a	+	n/a
intron	intron:Solyc01g086640.2.1.4	SL2.50ch01:81620746..81620837	n/a	+	n/a
intron	intron:Solyc01g086640.2.1.5	SL2.50ch01:81621097..81621212	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc01g086640

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17685882%2Fdetails feature 17685882

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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