Notice: Due to a wide-spread power outage in the area, SGN was unavailable early on Sunday. We apologize for the inconvenience.

Solanum lycopersicum mRNA Solyc01g079330.2.1

mRNA details  
Name
Solyc01g079330.2.1
Type
mRNA
Length
2,830
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch01:78398525..78407849
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
9325
Nb exon
6
Sifter term
GO:0005515
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g079330.2.1 ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

GAAAGGAAAAAACCAAAATAAAATAGCCCGTGGGCCGGCCTTAGTTCAGTCGCCGTTCCCCGCTGTTCATATTAGCTTCCGTTAAGCGGCAAAAAAAATAGGCGTTTTTCAGAAACAAACCGATGATAAGCAAGGTGGTTTAGATTTTAGAATTTGGATAGCTCTCTTTTCTCTGGCCGGAATTTGTTAGATAATACCATATCTGTATATTCAGTTTTTTTTTAGGGTTCAGTAAACTAGGGTTTGAACTTTTGAATCAAACGGATATGTCGAAGAGAAAATTTGGATTCGAAGGATTTGGCATTAATCGGCAAACAACGTACAACTTCGAGCGAAATCAAGCTCCTCAGCGACTGTATGTTCCGCCATCCTCACGTTCTGGAGGTAGCCATGACAATTACGAAGATACCGACTTAGATAACATTGAGTACGATGAACACGACGCTGTCGGAGGGAACAACAATGATGGAGGCGGAGGAGGTGGTGAAGATGATGAAATTGATCCACTTGATGCGTTTATGGAAGGGATTCATCAAGAAATGAAGGCTGCACCGCCTCCTAAGCCAAAAGAGAAGTTGGATAAGTATAAAGATGATGTAGATGATGATCCGATGGAGAGTTTTCTGAGAGCGAAGAAGGATGTAGGTTTACAATTGGCGGCTGATGCTCTTCACGCTGGTTATAATTCCGACGAGGAGGTGTATGCAGCAGCAAAGGCTGTTGATGCAGGATTAGTTGAGTATGACTCCGACGATAATCCTATTGTTGTTGATAAAAAGAAGATTGAGCCGATTACTGCTCTGGATCATAGTGAGATTGACTATGAGCCTTTCAACAAGGATTTTTACGAGGAAAAGCCTTCTATTTCAGGTATGAGCGATCAGGAAGTTAATGAATATAGGACAGGCTTGGCCATTCGTGTATCAGGCTTTGATGTACCAAGGCCAATTAAGACATTTGAAGACACTGGTTTTTCTGCTGAGTTGATGAAAGCTATCAGTAAACAGGGATATGAAAGGCCTACGCCAATACAGTGTCAAGCATTACCAATTGTGCTCTCTGGGAGAGATATTATTGGTATTGCTAAAACTGGGTCCGGTAAGACTGCTGCCTTTGTGCTTCCTATGATTGTCCACATCATGGATCAGCCTGAACTTCAGAAAGAAGAAGGCCCCATTGGAGTTATTTGTGCACCCACTAGGGAATTAGCACATCAAATATTTGTGGAGGCAAAGAAATTCTCGAAATCGCATGGTATCCGTGTGTCTGCAGTTTATGGAGGAATGTCTAAATTGGATCAATACAAAGAACTAAAGGCTGGGTGTGAGATTGTTGTTGCTACTCCAGGGAGGTTGATAGATATGATCAGAAAGAAGGCATTTACAATGTTGAGAGCAACTTATCTAGTGCTTGATGAGGCAGATCGGATGTTTGACCTTGGTTTTGAGCCTCAAATAAGGTCCATTGTTGGTCAAATTAGACCTGATCGCCAAACATTGCTCTTTTCAGCAACTATGCCCCGCAAAGTTGAGAAGCTTGCCAGAGAAATATTGACGGATCCTGTAAGGGTTACTGTGGGTGAGATTGGCACGGCTAATGAGGATATTACACAAATAGTTGAAGTGATTCCTTCGGATGCTGAAAAATTGCCTTGGCTTCTGGAGAAGCTCCCTGGACTGATTGACAATGGTGATGTTCTTGTCTTTGCTTCGAAAAAGGCAACAGTGGATGAGATTGAATCTCAATTGGCTCAGAAGGGATTTAGAGTTGCAGCTCTCCATGGTGACAAGGATCAAGTTTCTCGTACGGAGACGCTGCAAAAATTTAAATCTGGCATATATCATGTTCTCATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCACTTAAGTCAGTGGTGAACTATGATATAGCTAAAGATATGGACATGCATGTTCACAGAATTGGTAGAACAGGTCGTGCTGGTGACAAGGATGGAACGGCCTTCACTCTTATTACTCATAAGGAAGCACGTTTTGCTGGTGAACTGGCGAACAGTTTGGTTGCTGCTGGTCAAACTGTGTCTGTGGAACTAATGGACCTTGCTATGAAGGACGGAAGGTTTCGGTCCAAAAGGGATGCAAGGAAAGGAGGTGGAAAAAGGGCCAAAGGAAGGGGAGGAGGAAACAACAAAGGTGTACGAGGTGTGGATTTTGGTCTAGGGATTGGATACAATCCTGAATCAAATAACCCTCTCCAGAGCGCTGCTCCAAGCCGTTCTGCAGCTGTTAATTCCCTGAGGACAGGCATGATGTCACAATTTAAAAGTAGCTTTGTTGCTGCATCATCAAATTCTCAAAATCAAGGGATGAATAACACAGCTGGCGCGTTTCCCAACAAGAAAATGGTCTTGCAAGGCTTTGTCTCTGGTGGGACTATAGGTGGAAATAGTAATACTCCCCATATTAGTTCCACATTTACTGCTGCAACACCTGGGGGATATACTTCTAGTCAGCCAGCTAGAGATGGAGCTAACCAGAAAAGTTCAGAGAGTTCAAAGGAGAGGTCCAGAGAGAGACGGAGGCCTTCTGGTTGGGATCGTTGATTTGTTATTTAGTACTGTGGGATATGCATGGTTTACGTGTCACTCCTCATCATGGTCTAAGTTGGTGACTTTTCTTTCAAACTCACCATTTGCATCAAGGAAATGAAAGGAAGATAAATTGTTATATCACATAACAAGTAGCGAGTATGCAGAGTCCAATCAGACTGGTGTCCATTGCAGAGATAGCTTGGGAGGAAGTTATGGTGCTTCTGAAATGGTTCATGTAAAATGATCTTTAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g079330.2.1SL2.50ch01:78398944..78407583775-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g079330.2SL2.50ch01:78398525..784078499,325-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g079330.2.1.1SL2.50ch01:78406980..78407849870-2
exonexon:Solyc01g079330.2.1.2SL2.50ch01:78401803..784030311,229-n/a
exonexon:Solyc01g079330.2.1.3SL2.50ch01:78399720..7839975940-2
exonexon:Solyc01g079330.2.1.4SL2.50ch01:78399101..78399500400-1
exonexon:Solyc01g079330.2.1.5SL2.50ch01:78398933..7839899664-n/a
exonexon:Solyc01g079330.2.1.6SL2.50ch01:78398525..78398751227-n/a
intronintron:Solyc01g079330.2.1.2SL2.50ch01:78403032..78406979n/a-n/a
intronintron:Solyc01g079330.2.1.3SL2.50ch01:78399760..78401802n/a-n/a
intronintron:Solyc01g079330.2.1.4SL2.50ch01:78399501..78399719n/a-n/a
intronintron:Solyc01g079330.2.1.5SL2.50ch01:78398997..78399100n/a-n/a
intronintron:Solyc01g079330.2.1.6SL2.50ch01:78398752..78398932n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17683020%2Fdetails feature 17683020
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)