Sol Genomics Network

Solanum lycopersicum gene Solyc01g068410.2

Name Solyc01g068410.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g068410	Length 3,003

Description

Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier

Location(s)

SL2.50ch01:77668365..77671367

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3003

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g068410.2.1	SL2.50ch01:77668365..77671367	1,385	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g068410.2 SL2.50ch01:77668365..77671367
CCATACAAAAACCCCAAATTCACAACAAAAAAAAAACCTTCAAAATTTACAAATTGAAATTAAACATGATAGGTTGGGATGATATATACAAGGTGGTGGTTGGGATGATGCCACTTTATGTAGCACTAATTTTAGGCTATGGTTCAGTAAAATGGTGGCACATGTTTAAGCCAGAACAATGTGACACAATTAATAGATTCAATTGTTTTTTCATCCTCCCATTTTTCAATTTCCAATTCATAGCTAAAATCAACCCTTACAATCTCAACTACCTTTTTCTGTCGGGAGACGTAATTGCTAAAGCGTTAGTGATTCTGATCCTGGTCCTGTGGGCTAACTTTTATAAAAAGGGGAGTTTTTGTTGGGGTATAACAACTTTTTCTTTGTCCACTTTGAATAACACACTTGTTGTTGGTGTCCCACTAATGAAGGCTATGTATGGGGATTTAGGTGTTGATCTTGTTGTTCAAGCAGCTGTGATTCAAGCTTTGTTGTGGTTAACTTCATTGTTATTTGCACTTGAATTTTGGAAAACAAAAATGACTAATAATAGTAATTTAATTGATGATAATAATAATAATTCTCTTGAATTGGGAAATATTAGTAGTACTAATACACAAATGAGGAACATTAATAACATTGAGCTGGCATTTTGGCCTTTGATGAAAGCTGTTTCTACAAAACTTGCTAAGAATCCAAATTCTTATGCTTGTTTTCTTGGTCTCTTCTGGGCTCTCGTAGCTAGCAGGTACGTATGAACATATTTTTATTTATTTAATTCAGTTCTTTACGTGTTAATTTGATGTTCTGATGAGTTAAATATATAAAAAAAATAAAATTTGACAACAAGATAAAATGATCGATTATAAGGCTAGGCCAGCCACGTGTAGTGAAAGACATGCAAATAAGGAAAAATAATTATTTTTTAGACATATATAAGAAATTTATTAGCCTTGACATTAGAGAAATAACAGGTGTGACATTAATGTATTCTGTTATCAAATTTTTAAAACTAACTATACTAGTTTTTAGTAAATTTCATTTATAAATACTTTTATTTAAAAGATATATTTTTTTACTTTTTCATCTTTGGTTATATTAAAGTGTTTTTTCTTTTTTCCACTCTAATTCTTTTTGTATTCAAATAATTGTTGTTTTAACTTATTTTAGTTTTTTTTTAAAAATCAGGTGGCATTTTGAAATGCCAAGCATAATAGAGGGATCAATTTTGATAATGTCAAAGGCTGGTAGTGGAGTTTCAATGTTTAGTATGGGTAAGTGTCTTTTTTAATTAATGTAAAAATAGCAATTAATAACTTTCGATCCTTTATTTTATTTAATGAAATTGCCACTAGCATTAAATAACATCTGATTTTTTTTGTTTATCAAACTACCACTTTTGTTCTATTTATGAACTGATTTTGACCAAAAATGACTCTTCACTAAAATTATCAAATTATGTAAGTTATTTGTCAAAATTTTAAAATACAAACATCCAAAAAGTGTTTATTTAGGAAAAGAAACTAGAGTACTTTTTGATAATAAATGATCAGGAAATTTGGTCAAAATTTTATAAGATTCTTTTTATTCATATTTATTTATTTATTAATTTAAAAATATTTTAAAAAGTAAAATAATATAGTATTGAAGTTGTTATTTTACCTTTCTGGTCAAAAGGATTTTTTCGTACTTTTTCTGCTTCAAAAAATAATTCTAAACCGTTCAATTAGTAATACTTAATTAAAAACATTTATTTTCTATTTGATTCGCGGAGAAAAATTATCCCGAAACTATATTTATCAAAGAGATTATTTATACCTTCAATCAAACAACGTTAAAATTTAATTTCAAACTTAATCGTGATATATTCCATCTTATTTCATAAACCAAACCTCTTCTAAAAGATTAATCAAACATCTCAAGTCACAAAAAAGACATACAATTTTGACTTCTCTTAAGGTTAATTAATGCCATTATTTTCACTAAACAAGAATGTTTCTCTTTTTTAATTTTTATTTTTAGGATTATTCATGGCTTTGCGTGGGAAAATAATTGCATGTGGAGCTGCATTGACAATTTATTCAATGATTTTGAGGTTTATTGTTGGTCCAGCAACAATGGCACTTGGTTGTGTTGTATTGGGCTTGAGAGGAAATGTTTTGCGCGTCGCTATTATTCAAGTAATTAACTACTAAATTAATCTCTCGATTTTTAAGTATTATTTATTTATAATTATCTTATAAATGATACGATAGTACGAGTAATTTGTTATCCTCATAGTTAATGTGTGTAACAAAAAGGCTCGAACGTAATTATGATGTATGTAATAAAAAACTCGAACATATTAGACTATAGTTATATATTTCATATTGATTTAAGAAAATTTTTAACCATAAAATTGTTATGGTTCTTAAAATTAATATAATGAAATTATTAAAAGTTTTGTATATTTATTTTTATTTTTATTTTTATTGCAGGCTGCATTACCCCAAGCAGTGACATCTTTTGTATATGCTCAAGAATATGGACTTCATGCTGATGTACTTAGCACTGCGTAAGTCATATTTAACTTATTAATCCATTTTTATATAAAAAAAATTAATTAGATTATGCAAGGTATATATATAGCTGTTTTACTACAAATTGAATCAAAGTTATTAATGACATTTTATTTTTCTTAATTTCAGGGTGATTGTTGGAACAATAATTTCGTTACCTCTATTGATAGCATACTATGCAGTTTTGGATATTATCCCTTAAGATCCGGCCATTAATTAACTAGCTAGACGCTAGTAAGTGTTCATCGAAGACATCTGATAAAATTAGAACGATATAGCTAAGGTAGTGGAAATGTTACTAAGTGGTACAACTTTGCTTGTAATTGAAAATTTGTAACAATTTTTGTTATCTATTTAGGATAAACATGTCACCTTCGATTATATACATGGATTTAAAGTCAAGTAAGTGACCTCTCAATTTCAAACAAGATTTTTGCTACTTCAA

Download sequence region

Download sequence (3.0Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g068410.2.1

Ontology terms

terms associated with this mRNA

GO:0009672 – auxin:hydrogen symporter activity

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g068410.2.1	SL2.50ch01:77668429..77671124	359	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g068410.2	SL2.50ch01:77668365..77671367	3,003	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g068410.2.1.1	SL2.50ch01:77668365..77669112	748	+	n/a
exon	exon:Solyc01g068410.2.1.2	SL2.50ch01:77669553..77669638	86	+	n/a
exon	exon:Solyc01g068410.2.1.3	SL2.50ch01:77670387..77670544	158	+	1
exon	exon:Solyc01g068410.2.1.4	SL2.50ch01:77670842..77670918	77	+	2
exon	exon:Solyc01g068410.2.1.5	SL2.50ch01:77671052..77671367	316	+	n/a
intron	intron:Solyc01g068410.2.1.1	SL2.50ch01:77669113..77669552	n/a	+	n/a
intron	intron:Solyc01g068410.2.1.2	SL2.50ch01:77669639..77670386	n/a	+	n/a
intron	intron:Solyc01g068410.2.1.3	SL2.50ch01:77670545..77670841	n/a	+	n/a
intron	intron:Solyc01g068410.2.1.4	SL2.50ch01:77670919..77671051	n/a	+	n/a

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Related views

Genetic loci

Tomato locus SlPIN5

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17681929%2Fdetails feature 17681929

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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