Solanum lycopersicum mRNA Solyc01g059870.2.1

mRNA details  
Name
Solyc01g059870.2.1
Type
mRNA
Length
3,729
Organism
Solanum lycopersicum
Description
Phytochrome B1
Location(s)
SL2.50ch01:68860531..68867469
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0009401
  • GO:0005515
  • GO:0016020
  • GO:0018298
  • GO:0005524
  • GO:0007165
  • GO:0006355
  • GO:0018106
  • GO:0045449
Length
6939
Nb exon
5
Sifter term
  • GO:0042802
  • GO:0009883
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g059870.2.1 Phytochrome B1

TTGTGTATTCAACCAAAAATTCAATCTTTTTTGAGTTTCCCAAAAGTAATCTGTTTTAGGGTTTTGAAATTGACAAGTTTTTCTATGTAATAGCAAGAAAAATTTTGTTTGGAAGAGAGAAAAATGGCTTCTGGAAGTAGAACAAAGCATTCTTATCATAATTCATCACAAGGTCAAGCTCAATCTTCAGGTACAAGTAATATGAATTACAAAGATTCAATAAGCAAAGCTATAGCACAATACACAGCTGATGCTAGGCTTCATGCTGTGTTTGAACAATCTGGTGAGTCTGGAAAGTCTTTTGATTATTCACAGTCTGTTAAAACTACTACACAATCTGTGCCTGAAAGGCAAATTACTGCTTATTTGACTAAAATTCAAAGAGGAGGTCATATTCAGCCTTTTGGTTGTATGATAGCTGTAGATGAGGCTAGTTTTCGTATTATAGCTTATAGTGAAAATGCCTGTGAAATGCTTAGTTTAACTCCACAATCTGTTCCAAGCCTAGACAAGTCTGAGATCCTCACTGTTGGAACTGATGTTAGGACCCTTTTTACCCCTTCTAGCTCTGTTTTGCTAGAAAGAGCATTCGGGGCACGTGAGATCACTTTACTCAACCCAATTTGGATTCATTCCAAGAATTCTGGAAAGCCCTTTTATGCAATTTTGCACAGGGTTGATGTAGGTATTGTCATTGATTTGGAGCCTGCTAGAACTGAGGACCCTGCTTTATCTATTGCTGGAGCCGTGCAGTCACAGAAACTTGCAGTGAGGGCTATTTCTCATTTGCAATCACTTCCTGGTGGGGACATTAAGCTTTTGTGTGATACTGTTGTTGAGAGTGTCAGGGAGTTAACCGGGTATGACAGGGTTATGGTATATAAATTTCATGAGGATGAACATGGAGAGGTAGTGGCTGAGAGTAAAAGATCAGATTTAGAGCCCTATATCGGTTTGCATTATCCTGCTACAGATATTCCTCAAGCTTCACGGTTTTTGTTTAAGCAGAACAGGGTGAGAATGATTGTGGACTGCCATGCTACCCCTGTGCGGGTTACTCAGGATGAATCACTGATGCAGCCTTTATGTCTAGTTGGTTCCACACTTAGAGCACCTCATGGTTGCCATGCACAGTACATGGCAAATATGGGGTCTATCGCCTCATTAACACTGGCAGTTATTATCAATGGAAATGATGAGGAAGCTGTTGGGGGTGGCCGAAATTCAATGAGGCTGTGGGGCTTGGTTGTTGGACACCACACTTCTGTTCGGTCCATTCCTTTTCCTCTTAGGTATGCATGTGAATTCCTTATGCAGGCCTTTGGACTCCAATTGAACATGGAGTTGCAATTGGCATCACAGTTGTCTGAGAAACATGTTTTAAGGACTCAAACACTGTTATGTGACATGCTCCTTCGAGACTCACCACCGGGGATTGTTACCCAAAGCCCCAGTATTATGGACCTTGTGAAGTGCGATGGTGCTGCTCTATACTACCAGCGGAAGTACTACCCATTAGGCGTCACACCAACTGAAGCTCAGATAAAGGACATTGTGGAGTGGTTATTGGCTTACCATGGAGACTCAACAGGTTTAAGTACTGACAGTTTGGCTGATGCTGGGTATCCTGGAGCAGCTTCACTTGGTGATGCAGTTTGTGGTATGGCTGTCGCTTATATAACTTCTAAAGATTTTTTGTTTTGGTTTCGCTCCCACACAGCGAAAGAAATAAAGTGGGGTGGTGCAAAGCATCATCCTGAAGACAAGGATGATGGACAGAGAATGCATCCACGTTCTTCCTTCAAGGCATTTCTGGAAGTTGTTAAAAGCCGGAGCTCACCATGGGAAAATGCCGAAATGGATGCAATCCACTCTTTGCAGCTAATTCTGCGAGATTCATTTAAGGATGCTGAGGCAAGTAATTCTAAGGCTATTGTGCATGCACTTGGGGAAATGGAGTTGCAAGGGATAGATGAACTGAGTTCTGTTGCCAGAGAAATGGTTAGATTGATTGAAACTGCAACAGCTCCCATATTTGGTGTTGATGTCAATGGCCGCATAAATGGGTGGAATGAAAAGGTCGTGGAATTGACAGGTTTATCAGCTGAAGAAGCAAAGGGGAAGTCCTTGGTTCATGATCTTCTGTATAAAGAATCACAGGAGAGTGCTGAGAAACTTCTGTACAATGCTCTAAGAGGCGTGGAAGGTAAAAATGTAGAAATAAAGTTGAGGACATTTGGAGCTGAACAAGTGGAGAAAGCTGTTTTTTTGGTGGTTAATGCTTGCTCCAGCAGAGATTACACAAACAGCATTGTTGGTGTTTCCTTTGTTGGGCAGGATGTTACTGGGGAAAAAATTGTTATGGACAAGTTTATTCACATTCAAGGTGATTACAAGGCCATTGTGCACAGCCCCAATCCTCTGATCCCTCCCATATTTGCATCAGATGAGAACACTTCTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTTTCTGGTTGGTCTAGAGAGGAGATTGTTGGAAAAATGTTAGTTGGTGAAATTTTTGGAAGTTGTTGTCGGCTCAAGGGCCCAGATGCCATGACAAAGTTCATGATCGTGTTGCATAATGCAATCGGAGGCCAGGACACAGACAAGTTTCCATTTTCCTTTTTTGACCGAAATGGGAAATATGTGCAAGCTCTTTTGACAGCAAACAAGAGAGTCAATATGGAGGGTGATACTATTGGGGCTTTCTGTTTTATACAGATAGCCAGTCCCGAATTGCAGCAAGCTCTAAGAGTTCAAAGGCAACAGGAAAAGAAGTGTTATTCTCAGATGAAAGAGCTGGCATACATTTGTCAGGAAGTAAAAAGTCCTCTTAATGGTATACGCTTTACAAATTCATTGTTGGAGGCCACAAATTTGACAGAATATCAGAAGCAGTATCTAGAGACAAGTGCTGCTTGTGAGAGGCAGATGTCTAAGATCATAAGGGATGTTGATCTGGAAAACATTGAGGATGGTTCACTGACCCTTGAGAAAGAAGATTTTTTTCTTGGGAGTGTAATAGATGCTGTTGTAAGCCAAGTGATGTTATTGCTGAGGGAAAAAGGTGTGCAGTTAATCCGTGATATACCAGAGGAAATTAAGACATTAACAGTACATGGTGATCAAGTGAGAATTCAACAGGTCTTGGCAGATTTCTTGTTGAACATGGTGCGGTATGCACCATCACCTGATGGGTGGGTAGAGATCCAACTTCGACCAAGTATGATGCCAATATCTGATGGAGCAACTGTTGTGCATATTGAACTCAGGATTATATGCCCTGGCGAAGGGCTTCCTCCTGAATTGGTTCAAGACATGTTCCACAGCAGTCGGTGGGTAACTCAGGAAGGCCTAGGACTGAGCATGTGTAGAAAAATGTTAAAGCTTATGAATGGAGAAATCCAATATATCAGAGAATCAGAAAGATGCTATTTCATGATTATCCTTGACCTGCCAATGACCCGCAAAGGTCCAAAGAGTGTTGGCTAGGAGCTTACAGCACACAGAGAGAGCAAGTATGGGGGATTGATCGGCATCTTTCTAACAGTATTAAACCAGCTGTTTCCAGCATTTTCCGACTTGAATTTGCTGGGTTTTTTATAACTCTGAACTAGTAGTCTCTCAGCATGTCAAGTTGAGAAAGCTATTGCTCCTTAGTGCATGGTTTTTACCAAAGATTAATTCGACATAGTAAGTGGC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g059870.2.1SL2.50ch01:68860828..688673461,132-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g059870.2SL2.50ch01:68860531..688674696,939-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g059870.2.1.1SL2.50ch01:68865273..688674692,197-2
exonexon:Solyc01g059870.2.1.2SL2.50ch01:68863617..68864424808-1
exonexon:Solyc01g059870.2.1.3SL2.50ch01:68862180..68862473294-1
exonexon:Solyc01g059870.2.1.4SL2.50ch01:68860813..68861048236-n/a
exonexon:Solyc01g059870.2.1.5SL2.50ch01:68860531..68860724194-n/a
intronintron:Solyc01g059870.2.1.2SL2.50ch01:68864425..68865272n/a-n/a
intronintron:Solyc01g059870.2.1.3SL2.50ch01:68862474..68863616n/a-n/a
intronintron:Solyc01g059870.2.1.4SL2.50ch01:68861049..68862179n/a-n/a
intronintron:Solyc01g059870.2.1.5SL2.50ch01:68860725..68860812n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17678496%2Fdetails feature 17678496
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