Solanum lycopersicum mRNA Solyc01g057760.2.1

mRNA details  
Name
Solyc01g057760.2.1
Type
mRNA
Length
4,035
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch01:63614060..63622628
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005515
  • GO:0005524
Length
8569
Nb exon
11
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g057760.2.1 ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

ATGAATCAAATAATTATCAGATATGAATATTTCATCAAATACGTTCAACAATCAAAATGTGTTAAAAAAGAGCACGAGGAAATGACCCAAACAAGTTCTTTGAATGACTATGCATTCAATTATTTATTTTTCAATACAATTCTCTTCTTGAAAGACCTGAACCCTAAACTTCAAATTAAGCGTACAATCCTCTTCCGTCGGCACTCGGCACCCGGAGCTCGCCGTACACAAAGCTTCCCTGAAGTTAATTGTTTGAGCTCAAGTATGACAACTCCTGAGGCAGCTACGGCTTCCTTAGGACCTCGTTATGCACCTGATGATCCAAATTTACCCCAACCTTGGAAGGGCTTAATTGATGGTAGTACTGGGTTATTGTACTTCTGGAATCCAGAAACTAATGTTACTCAGTACGAGAGGCCATCAGCTTTACCACCTCCACTGCCGCCTGGTCCACCTCCGGAAGCTTCTGCTCCTAAGTTGGCTCCTATACCAGGAGCTAGCACAGTGCAACAATATGATAGTCAAGGTCAACAGAACCAACAGGCGTTTGCTCAACAAGGCCAAATGACACACATGTCACAACATCCACAAGTAGCTCAACAGGTACCACATGGATCACAAGGTGTTTCAGCAGGGCAGCAACAAGGATCACCAGCTGGTCCTGCCATGCAACAGGTGTCCTTTATGCCACAACTTCGGTCTCAAATGATCCAGCAACCTGTTCATCAGATGCCATCGCAAATGGGACAAACTCCTAATCAGCCAGGGCCACATGTTTCTCAACCTGCAGCACAACAAATGATGCCACAACAACTAGGCTCCCAAGCACAAGCATTTCCAAGTGTACAAATGGGACAACCACATGGTTATCAATTTTCTCATCAGCAGGCACAGCATGTTGCGTATCCACATAATTTGCCTCCACAGGGACAGCTAATTCCACAGCAGCAAAATCAGCACGTTCCGCAAAATCAACAGTTTTCCCATCAACAAGAGCATAAGGTGGGATTTCAGCAAAGGGAAGATGTTGATTTCCCCCAAGGTAAACAAGTTAGGTTTTCGCCACAACAAGTTCAGCAAACTGGTGCATCATCTGCTCAGAATCCGCAAGTGGGGACTGGTTCTGTTATCAGACCTCAGATGTCTGCTCAGCCTTCTCAAGCTTTGCAGTTTGGCGGTTCTTCTGTAAATGTCCAACAACCATCATCTTTGGGTCAATGGCAGCAAAATACAAATGATTCAGGTCAGAGGCCGCCTGGTCCTCGCTTTCCCGGTCAGATGGGCTCAAGTACGGCACATGGTCATGAGCTTGATATACCCCCAGTTGGATCAAAGGGTTATGAGGAAAACACACCCGGAAGAGGAGGAAATGACTATTATTACAACAGTAATATGGATAGTCGAATTAGGCCTCCGCCTCAGCAACCCAAGCTTGCAGCTATACCTGTAGCAAGAAATCAGCATGAAATGAGAATGGGTGATCCTCCGCTTCAAAATCCAGTACCAACTCTTCCTAGTGGGTTCAATAGCATGGGTGGTCCTCCGATGCAAAATATCTATGGTCAAGCAGCTGGTGGACCTCCATTTTCAAATTCTAGCCTCATGCGGCCACCTGGAGCACTCACTGGACCTCCAGGATCGATGCATCCATCATCCGTTGAGGTTTACCTTCAGAAGCATGAAGTAACTGCAACAGGTGGTGATGTCCCTGCTCCATTCATGACATTTGAAGATACTGGGTTCCCGCCAGAAATACTAAGAGAGATTCAGTTTGCGGGATTCACTTCACCCACTCCCATTCAGGCACAAACATGGCCCATAGCATTGCAAAATAGGGATATAGTGGCCATTGCCAAGACAGGTTCTGGCAAAACATTGGGCTATCTAATTCCTGCATTTGTCCACCTTAAACGGCGGCGCAACAATCCTCAAAATGGCCCGACAGTGGTGGTTTTATCTCCAACGCGAGAGCTTGCCACACAAATACAAGATGAAGCGCTGAAGTTTGGTCGATCTGCAAGGGTTTCTTGCACGTGCTTGTATGGAGGTGCACCCAAAGTTCACCAGTTGAAAGAACTAGAGCGCGGAACAGATATTGTTGTTGCAACTCCTGGTCGGCTTAATGACATCCTTGAAATGAAAAGAATTGACTTTAGACAGGTTTCTCTTCTCGTGCTAGATGAGGCTGATCGTATGCTTGACATGGGTTTTGAACCTCAGATCCGCAAGATTGTAAATGAGATACCCCCACAAAGACAAACACTTATGTACACAGCAACTTGGCCCAAAGAAGTGCGAAAAATAGCCGGTGATCTTCTTCGAAATCCTGTCCAGGTTAATATTGGTAATGTTGATCAGCTTGCAGCAAACAAGTCTATCACACAGTACATTGAAGTAGTCCCGCAAATGGAGAAGCAGAGACGGTTGGAGCAGATTCTTAGATCCCAAGAAAGGGGTTCTAAAGCTATTATATTCTGTTCCACAAAGAAGTTGTGCGACCAACTTGCACGAAGTATTGGTCGAAACTTTGGAGCTGCAGCTATTCATGGAGACAAGTCCCAGGGTGAGAGAGACTGGGTTCTCAACCAATTTCGCGCTGGCAAGACCCCAATTTTAGTAGCAACGGATGTTGCTGCTAGAGGACTGGATATACCTGATATAAGAGTGGTGATCAACTATGATTTTCCGACTGGGATTGAGGATTATGTTCACCGAATTGGAAGAACTGGTAGGGCTGGTGCAACTGGTGTTTCATACACCTTTTTATCTGATCAGGACTGGAAATATGCTCCTGATCTTGTTAAAGTTCTGGAAGGCGCAAATCAGCAAGTACCGCCGGATGTTAGGGAGATGGCTTTACGTGCTGGTGGCAGGGATAGAGGTGGCATGAACCGTTCTGATCTTGTCGATGGTGATGGTGGCCGCACACGTTGGGATTCTGGTGGCCGTGGTGGGATGAGGGATGGTGGATGGTGGGTTTGGTGGTCCTGGTGGGATGAGAGAAGGGAGAGCAACTTTGGTGGCCGCGGTGGAAGGGATGGTCACTTTGGTGGCCGTGTTGGGATGAGGGACAACAATTTTGGTGGCCGTGGTGGCAGGGGTGGTGCTCAAAGTGCTTGGGACAGGAGTGATCGTTATGACAGTTCAGATGTGCGAGGACGTGGGAGAGGTCGTGGGCGTGGACGTTTTGACAATAGAAGAGACATGCCAAGTCGGAGTCGAGGAAGAAGTTATAGTCCTAGTCCAGAGAGAGTTCGAACATGGGGTAGTAGAAGCAGAAGCAGGAGTCGCAGCAGAAGCAGGAGTTATAGTAGGAGTTACAGCCGAAGCCGTAGCCGCAGCTACAGCCCCAGGCGTAGCCGCAGCCGCAGCCGCAGCCTCAGCCGCAGTCGTAGTCGTAGTCGTGATAGATATCAAAGGAGGCCTCGCCAAAGTAAGTTCGATCAGATGGATCCAGATCCAGGAATGTCAAGCATTCAGGTTGCTCCTCCATCTGTGATGCCTCCATTGTCTATAGGTGCACCAGTTGATGGATTTTCTGGAGCTGCGCCAGTGGATTCAAAACCAAATATGGAGATAGCCCCAGAATCTGGCATGTCACCTATGTCTCCAGGAACTCGAGGAAATGGGTTGCCAGGATCTGAGGTCATAGAGCAGAACCATTGAATTGGAAGCTCCACTCGTGCTATTCATGTATTTCTACAACATTAGGGGAGGGAGTTGCTGTTTAGTAAGCATGCATAGAGACGACAGTAGATAGAGTGTCGAGTTCAATTGTGAAATTGATATTTTGCTGCAGCCATATGCATGTGCAAGGGACCTGGTATATGCTATTTTTCAGGGGGGAGGAATGCTAATGGTGGACAGAGATGTTGATGCTCTCTATAAAACGTTCTGCTCACTCACTTCTCTAGACTATTTTCAGTGAGGACTTGCCATCAGAAGTTTTCTTTTGGAGTGAACGAGGGTAAATCATGCCTGGTTTAGATGATCATATACTTAATTGTTGTCACAATTGCTTATACCCCTAAATAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g057760.2.1SL2.50ch01:63614059..636222591,222+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g057760.2SL2.50ch01:63614060..636226288,569+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g057760.2.1.1SL2.50ch01:63614060..63614194135+n/a
exonexon:Solyc01g057760.2.1.10SL2.50ch01:63621470..6362150738+n/a
exonexon:Solyc01g057760.2.1.11SL2.50ch01:63621599..636226281,030+1
exonexon:Solyc01g057760.2.1.2SL2.50ch01:63614410..63614531122+n/a
exonexon:Solyc01g057760.2.1.3SL2.50ch01:63615204..636164101,207+1
exonexon:Solyc01g057760.2.1.4SL2.50ch01:63616791..63617021231+n/a
exonexon:Solyc01g057760.2.1.5SL2.50ch01:63618696..6361876469+n/a
exonexon:Solyc01g057760.2.1.6SL2.50ch01:63619307..63619576270+n/a
exonexon:Solyc01g057760.2.1.7SL2.50ch01:63619655..63620005351+n/a
exonexon:Solyc01g057760.2.1.8SL2.50ch01:63620663..63620940278+n/a
exonexon:Solyc01g057760.2.1.9SL2.50ch01:63621107..63621410304+1
intronintron:Solyc01g057760.2.1.1SL2.50ch01:63614195..63614409n/a+n/a
intronintron:Solyc01g057760.2.1.10SL2.50ch01:63621508..63621598n/a+n/a
intronintron:Solyc01g057760.2.1.2SL2.50ch01:63614532..63615203n/a+n/a
intronintron:Solyc01g057760.2.1.3SL2.50ch01:63616411..63616790n/a+n/a
intronintron:Solyc01g057760.2.1.4SL2.50ch01:63617022..63618695n/a+n/a
intronintron:Solyc01g057760.2.1.5SL2.50ch01:63618765..63619306n/a+n/a
intronintron:Solyc01g057760.2.1.6SL2.50ch01:63619577..63619654n/a+n/a
intronintron:Solyc01g057760.2.1.7SL2.50ch01:63620006..63620662n/a+n/a
intronintron:Solyc01g057760.2.1.8SL2.50ch01:63620941..63621106n/a+n/a
intronintron:Solyc01g057760.2.1.9SL2.50ch01:63621411..63621469n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17677528%2Fdetails feature 17677528
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