Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577086 in the current build, Tomato 200607 #2

Unigene SGN-U345915

Unigene Basic Information

Unigene ID:	SGN-U345915
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	345915
mRNA sequence:	Length: 3352 bp

>SGN-U345915 Tomato 200607 #1 (1 members)
GGCACGAGCCTACTTTCACCTTCTTGTTTCATTTATCTCTCACTTTTTGCAATTAAGGGCTTTTAAAGATTTCATTTTTGGGTCTTCTTG
TATTGAAGATTCCTGAAAAAAGTTAAAACTTTTTTGTGATACAAAGAATTTCCTGTGGAGATTTTAAAGCTCCACAGGAAGGTGTTTGTG
TTTCCAAGCCCATCCTGATTTTTTATCTGCAGATTTTTGCTTAAGGTCATCCATTTTCTAATCTTTATTCTAGTTTTTTGCTCTATTTCT
TCTAAAGATTAGAACTTTGATGTTGTTTTGCTAGTTTTTCTGTTTTTGTTTTTTTTTGGTTTCATTTTTGCTGAGTGTGCAGAAGAAAAT
CTAAGGAGGCCTTTAGTGGGTGAAGGAATAGTTGATGAATTTAGTTTAACTGAAAATTTGGGAACTTGGGTCAAAAGGGTATGCTAGATC
TTTTGGCATGTATGTATGTTAGATCTAGGCATGTGCCAGATCATTTTTATTATTATTTTATTGGGGCTTGTGTTATCTGGGAATACATTT
AGTAGAGGCTTAAGCCAATGAGATCTCATTCTTGTAACTTGGCTAATAGTCCAAGGGTTGTTCTGCTTTTATCTTAATTCAGTTGATATT
TCCAGATAATCAAGTTTTGCTTAGTGGATGGACTGAAAAGGGGGATTGAGATGTTGGCAATGTTAAGGTTGTTGTTTCTGGTACTGTTGA
TTTCTTTGGTCATTATATCTGTTTCAGCTAATGATGGTGAATTCTTCAATTGCTGTGATGAAGATGGTTTTTGGAGTATACATACTATTT
TAGACTGCCAGAAAGTGAGTGACTTCTTTATTGCTGTTGCTTACTTTTCTATCCCTCTTGAGTTGCTTTACTTCATTAGCCGCTCGAATC
TTCCTTTCAAATGGGTTCTAGTTCAGTTCATTGCTTTTATAGTGCTTTGTGGATTGACACATTTGCTCAATGGATGGACTTACAATCCTC
ATCCTTCTTTCCAATTGATATTGTCCCTAACCGTTGCGAAAATCCTTACTGCCCTTGTATCTTGTGCAACTGCAATCACCCTTTTGACTC
TGATCCCTCTTCTCCTAAAGATAAAGGTCAGAGAACTTTTTTTGGCACAGAATGTTTTAGAGCTAGATCAAGAGGTTGGGATGATGAAGA
AACAAACAGAAGCTAGCATGCATGTCCGTATGTTGACACACGAAATTAGGAAGTCACTTGATAAGCACACAATATTATACACTACACTAG
TTGAACTTTCGAAAACCTTAAAGTTGCAGAATTGTGCTGTTTGGATGCCAAATGAAAGTAGGTCACAGATGAACTTAACACATGAATTAA
GCCCCAGTTCTGCTGCAGAAAGTCATCGTTCACTCTCAATTAATGATCCAGATGTGTTGGAGATAACAAAGAATAAGGGAGTAAGGATTC
TGAGGCAAGATTCAGTTCTTGCAGCTTCGAGCAGTGGAGGATCTGGTGAACCATGTGCTGTTGCTGCTATTCGGATGCCACTGCTTCGTG
CTTCGGACTTCAAAGGTGGGACTCCAGAGTTGGTTGACACTCGTTATGCCATTTTAGTTTTGGTTCTTTCAAGTGTTGATGAGAGAGTCT
GGAGCTATGATGAGATGGAGATAGTGGAAGTAGTTGCTGATCAGGTGGCTGTGGCTTTATCCCATGCCACTGTTCTTGAAGAGTCTCAGA
CGATGAGGGAGAAACTAGAAATGAGAAATCGTGTGCTTCAGCAGGCTCAAGAGAATGCTATGAAGGCAAGCCAGGCAAGGACTTCGTTTC
AGAAGGTGATGAACAATGGTATGAGGCGGCCTATGCACTCAATCTTGGGTTTGCTCTCCATATTTCAAGATGAGAAAGCAAGTTCTGACC
AGAGGATGATTGTTGACACAATGGTGAAAACAAGCACTGTTCTCTCAACACTAATAAATGACGCAATGGAGATATCTGCAAAAGATGATG
GAAGGTTTCCAGTAGAAATGAAGCCCTTTCAGTTGCATTTACTGGTCAGGGAGGCTTCTTGTCTTGTTAAGTGTTTGTGTGTCTATAAGG
GATTTGGGTTTTCTACAGATGTTCCCACTTCTTTGCCTAATCAGGTGATGGGCGATGAAAAGAGAACTTTTCAGGTTTTATTACATATGG
TAGGACACTTATTAAATGTCAGCATTGGTAAGGGCTCTGTTATATTCAGAGTCGTTCTAGAGACTGGAGCTGAGACTGGGAATGACAAAG
TTTGGGGAACAAGAAGACCAAGCACGACAGACGAATATGTGACCATAAAATTTGAAATTGAGGTTAGCCTTGAAGGCTCTCAATCTGATA
GCTCAATCTCGACTATTCACTTTGGTGGAAGAAGGCATAACAGCAAGGAAGTAACGGAGGGCTTGAGTTTCAACATGTGCAAAAAGCTTG
TTCAGATGATGCAGGGAAATATATGGATGTCCTCGAATGCCCAGGGTCATGCGCAGGGGATGACACTCATTCTCAGATTTCAAAAGCAGT
CATCTTTTAGGAAACGCATGTTTGAATACAGAAATCCTTTGGAGCAACCGATTTCTAGCACAATGTTCAGAGGCCTTCATGTACTCCTTA
CTGATGACGATGATGTAAATAGACTGGTAACTAGAAAGCTCCTCGAAAAACTAGGTTGCCAAGTAACTGCTGTTTCAACCGGTTTTCAAT
GCCTGAGTGCTCTGGGCCCTTCACTAACAACCTTTCAAGTACTCATCTTGGATCTTCAAATGCCAGAAATGGATGGATATGAAGTGGCAT
TGAGGGTGCGTAAGTTCCGCAGCCGTAGTTGGCCGTTGATCATAGCCCTGACTGCTAGTTCAGAGGAACAGGTTTGGGAGAAATGCCTAC
AAGTGGGAATGAATGGTCTAATAAGGAAACCTGTTCTTCTACAAGGCTTGGCTGATGAACTTCAACGACTCCTTCAAAGGGGCGGCGGTG
GTGATGGCTTGTGAGATGTTAGTACTAATGGTGAATAACAAACTTCAAAAGGTTCCTGGAAAAACATGAGAGGAGACTTTAATATATCAT
ATAATACCCATATAGAGATAGCTTTACATCTTTGTTAGATGAAACAAGCTTCTTCCTAACCATGTAGCTACCACCAGTTTCCATTATGTA
AGTATATAGGTCTGCTTGCAATTCAGTTCTCTTGGCTTATGTTGAAGTGAAATATGTCAAGATAGTGGTATGGGGGTTCCATCATTTTTT
CCTCAGAAACAGAAGAATGTTACTGATTTGAAAAGAAATCTTTAATCCTTGCAAGCTTATACTTGTTCCTCACACATGTTAGTTTTGGAT
ACAAACATTATAAACTTTGACT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
etr5	ethylene receptor homolog (ETR5)

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E747568
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 9 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P147980 (785 Aa)

MLAXVKVVVSGTVDFFGIISVSANDGEFFNCCDEDGFWSIHTILDCQKVSDFFIAVAYFSIPLELLYFISRSNLPFKWVLVQFIAFIVLC
GLTHLLNGWTYNPHPSFQLILSLTVAKILTALVSCATAITLLTLIPLLLKIKVRELFLAQNVLELDQEVGMMKKQTEASMHVRMLTHEIR
KSLDKHTILYTTLVELSKTLKLQNCAVWMPNESRSQMNLTHELSPSSAAESHRSLSINDPDVLEITKNKGVRILRQDSVLAASSSGGSGE
PCAVAAIRMPLLRASDFKGGTPELVDTRYAILVLVLSSVDERVWSYDEMEIVEVVADQVAVALSHATVLEESQTMREKLEMRNRVLQQAQ
ENAMKASQARTSFQKVMNNGMRRPMHSILGLLSIFQDEKASSDQRMIVDTMVKTSTVLSTLINDAMEISAKDDGRFPVEMKPFQLHLLVR
EASCLVKCLCVYKGFGFSTDVPTSLPNQVMGDEKRTFQVLLHMVGHLLNVSIGKGSVIFRVVLETGAETGNDKVWGTRRPSTTDEYVTIK
FEIEVSLEGSQSDSSISTIHFGGRRHNSKEVTEGLSFNMCKKLVQMMQGNIWMSSNAQGHAQGMTLILRFQKQSSFRKRMFEYRNPLEQP
ISSTMFRGLHVLLTDDDDVNRLVTRKLLEKLGCQVTAVSTGFQCLSALGPSLTTFQVLILDLQMPEMDGYEVALRVRKFRSRSWPLIIAL
TASSEEQVWEKCLQVGMNGLIRKPVLLQGLADELQRLLKGAAVVMACEMLVLMVNNKLQKVPGKT

SignalP predicts non-secretion with a score of 0.415

IPR003594 ATP-binding region, ATPase-like
IPR001789 Response regulator receiver
IPR001093 IMP dehydrogenase/GMP reductase
IPR003018 GAF
IPR003661 Histidine kinase A, N-terminal

Prediction based on longest six frame method

>SGN-P275640 (785 Aa)

YFQIIKFCLVDGLKRGIEMLAMLRLLFLVLLISLVIISVSANDGEFFNCCDEDGFWSIHTILDCQKVSDFFIAVAYFSIPLELLYFISRS
NLPFKWVLVQFIAFIVLCGLTHLLNGWTYNPHPSFQLILSLTVAKILTALVSCATAITLLTLIPLLLKIKVRELFLAQNVLELDQEVGMM
KKQTEASMHVRMLTHEIRKSLDKHTILYTTLVELSKTLKLQNCAVWMPNESRSQMNLTHELSPSSAAESHRSLSINDPDVLEITKNKGVR
ILRQDSVLAASSSGGSGEPCAVAAIRMPLLRASDFKGGTPELVDTRYAILVLVLSSVDERVWSYDEMEIVEVVADQVAVALSHATVLEES
QTMREKLEMRNRVLQQAQENAMKASQARTSFQKVMNNGMRRPMHSILGLLSIFQDEKASSDQRMIVDTMVKTSTVLSTLINDAMEISAKD
DGRFPVEMKPFQLHLLVREASCLVKCLCVYKGFGFSTDVPTSLPNQVMGDEKRTFQVLLHMVGHLLNVSIGKGSVIFRVVLETGAETGND
KVWGTRRPSTTDEYVTIKFEIEVSLEGSQSDSSISTIHFGGRRHNSKEVTEGLSFNMCKKLVQMMQGNIWMSSNAQGHAQGMTLILRFQK
QSSFRKRMFEYRNPLEQPISSTMFRGLHVLLTDDDDVNRLVTRKLLEKLGCQVTAVSTGFQCLSALGPSLTTFQVLILDLQMPEMDGYEV
ALRVRKFRSRSWPLIIALTASSEEQVWEKCLQVGMNGLIRKPVLLQGLADELQRLLQRGGGGDGL

SignalP predicts secretion with a score of 0.675

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129698	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	16

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
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Event Web URL: