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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578165 in the current build, Tomato 200607 #2

Unigene SGN-U333745

Unigene Basic Information

Unigene ID:	SGN-U333745
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	333745
mRNA sequence:	Length: 199 bp

>SGN-U333745 Tomato 200607 #1 (1 members)
GGCAGCACCAGCACCTTGAAGCGAATCTGGTGAAGGGACGCCAAGGAGAACGCATTAGGCTCTACGTTAGAGGGACTGTTCTTGGATACA
AAAGGTCGAAATCGAACCAGTATCCCAACACTTCGTTGATTCAGATCGAGGGAGTGAACACTAAGGAAGAAGTGGACTGGTACCTTGGGA
AGAGGCTGGGATACATCTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E378324
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

TOM1 data for Unigene: SGN-U333745

SGN-C	SGN-E	Dir.	Chip	SpotID	Order	Info
SGN-C184628	SGN-E378324	Unknown	TOM1	1-1-7.1.14.12TUS45E10	Order Array	TMD

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15221191\|ref\|NP_177567.1\|	149	3e-34	66.96	327 bp (164.3%)	1
Description:	60S ribosomal protein L35a (RPL35aC) [Arabidopsis thaliana] >gi75169629\|sp\|Q9C912.1\|R35A3_ARATH…
arabidopsis	blastx	At1G74270.1	149	4e-36	66.96	327 bp (164.3%)	1
Description:	60S ribosomal protein L35a (RPL35aC) \| chr1:27932076-27933127 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005622 intracellular
GO:0006412 protein biosynthesis
GO:0005840 ribosome
GO:0003735 structural constituent of ribosome

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P136177 (177 Aa)

KXXPYGCRITPEIDSTSRGSPGCSGSGTAAAPALEANLVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVDWYLGKR
LGYIYXGKTKKNNSHYRCIWGKVAGHMETVAFVELSSSPFCLLNHGSQGRGFMYPATFSWALKCQGSGWKSLVVMGGAGMGTIIVFM

SignalP predicts non-secretion with a score of 0.029

IPR001780 Ribosomal protein L35Ae

Prediction based on longest six frame method

>SGN-P263119 (80 Aa)

RQHQHLEANLVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVDWYLGKRLGYIYXGKTKKNNSHYRC

SignalP predicts non-secretion with a score of 0.057

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P263120 (80 Aa)

ATIVRVILLCLAXVDVSQPLPKVPVHFFLSVHSLDLNQRSVGILVRFRPFVSKNSPSNVEPNAFSLASLHQIRFKVLVLP

SignalP predicts secretion with a score of 0.715

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101742	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Glutamyl-tRNA synthetase class Ic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424)	41
2	118818	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129394	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U213260	Lycopersicon Combined #3

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