Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581550 in the current build, Tomato 200607 #2

Unigene SGN-U333686

Unigene Basic Information

Unigene ID:	SGN-U333686
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	333686
mRNA sequence:	Length: 1662 bp

>SGN-U333686 Tomato 200607 #1 (1 members)
GAGCTTTCAACACTCAAGAGATCGGAAGAAACTGAAATCACACAGAGCCCAAATTTTTCAATAGCTTTTAGTACTATCAGATAATGGCTA
GATACGACAGAGCGATCACCGTTTTCTCGCCGGACGGCCACTTATTCCAAGTGGAGTACGCCATGGAAGCCGTACGCAAAGGAAACGCCG
CCGTCGGTGTACGTGGAACTGACACTGTTGTCCTCGGCGTCGAGAAGAAGTCCACTCCCAAGCTTCAAGACTCCAGGTCAGTAAGAAAGA
TAGTGAATCTAGATGATCACATTGCGTTGGCGTGTGCTGGGCTGAAAGCAGATGCACGAGTTCTTGTGAATAAAGCACGCATTGAGTGTC
AGAGTCATAGGCTTACAGTTGAAGATCCTGTTACTGTTGAGTACATAACTCGTTACATTGCTGGTCTTCAGCAAAAGTACACCCAAAGTG
GTGGGGTGAGGCCATTTGGTCTATCCACCTTGATCATTGGTTTTGACCCACACACAGGTGTCCCCTCACTTTACCAAACAGATCCATCAG
GTACATTCTCAGCTTGGAAAGCCAATGCGACTGGTAGAAACTCCAACTCTACTCGGGAATTCTTGGAGAAGAATTACAAAGAAACATCTG
GCCAGGAAACTGTGAAACTAGCAATACGTGCATTGCTTGAAGTTGTTGAAAGTGGTGGAAAAAACATAGAAGTTGCTGTGATGACAAAAG
AGCATGGGCTTAAGCAACTTGAGGAAGCTGAAATTGATGCCATTGTTGCTGAGATCGAAGCAGAGAAAGCTGCTGCAGAAGCAGCCAAAA
GGCCCCACCGAAGAAACCTAGTTGAGCTGAAATTTGTTCTTAACTATCCCTGAATCCTTTCTTTTTTCGGTTCAAGCCAAGTGCAGTGTT
ATTTGAATTTTAAGATTTTGGTCCGTCTAAAACTTTACCTTTCGTTAAAATTATGGGACTAAAAATGTCATTGCACTCATGCGCTACTTG
TGTGTTGCTTGATATTTTAAAGTCTCGTGCCGAATTCGGCACGAGCGCAAAACCCACAGGGGTCTACGTAAGGTTGCTTGTATTGGTGCC
TGGCATCCTGCTAGAGTTTCATTCACAGTGGCTCGTGCTGGTCAAAATGGATACCATCACCGTACTGAGATGAACAAGAAGGTTTACAAG
CTCGGCAAGGTTGGACAGGAGTCCCACACTGCCCTAACTGAGTTTGACAGGACTGAGAAAGACATTACACCTATTGGTGGATTTCCCCAT
TATGGTGTGGTGAAGGAGGATTACCTGTTGATCAAGGGATGCTGTGTTGGTACTAAGAAGAGGGTTGTAACTCTGCGTCAATCCCTTCTC
AACCAGACTTCTCGTGTTGCTCTTGAGGAGATTAAGCTGAAGTTCATCGACACATCCTCCAAGTTTGGACATGGTCGCTTCCAGACCACC
CAAGAGAAGCAGAAATTCTATGGACGCCTGAAGGCTTGAATGTTTCAGCATCCACTTTGTTTGGGTTAAACCATAAGTTTTAAACAATTT
ATTGTTCCAACTAGTGTTTTTATTTTTGTGAGGTTTTTCTGGAGACAATTTTTGACATTTTAAAGCTTTTTGTTGCATTAAGGATTCTAG
TTGAGAACTTCTATATAATGCAAAAGTTTTGTTGCTTTGTTC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
psr5	LEY14339 proteasome, alpha subunit
rpl3	ribosomal protein L3

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E744897
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 9 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101456	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	138
2	118836	Translation factor Ribosomal protein L3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	130743	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) Proteasome alpha-subunit - Molecular Function: endopeptidase activity (GO:0004175) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	9

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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