Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U563423 in the current build, Tomato 200607 #2

Unigene SGN-U322130

Unigene Basic Information

Unigene ID:	SGN-U322130
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	322130
mRNA sequence:	Length: 3638 bp

>SGN-U322130 Tomato 200607 #1 (8 members)
ATGTATTGGGTTACGGCAAAAAACGTCGTCGTTTCAGTTCCCCGTTGGCGTTCACTGTCCCTTTTCCTCCGTCCACCACTTCGCCGGCGT
TTCTTATCTTTCTCTCCACATACTCTGTGCCGAGAGCAGATACGTTGCGTGAAGGAGCGGAAGTTTTTTGCCACAACGGCAAAAAAACTC
AAACAACCAAAAAGTATTCCAGAGGAAAAAGACTATGTTAATATTATGTGGTGGAAAGAGAGAATGGAATTCTTGAGAAAGCCTTCTTCC
GCTCTTCTGGCTAAGAGGCTTACATATTGTAACTTGCTGGGTGTGGATCCGAGTTTGAGAAATGGAAGTCTTAAAGAGGGAACACTTAAC
TCGGAGATGTTGCAGTTCAAGTCAAAATTTCCACGTGAAGTTTTGCTCTGTAGAGTAGGTGATTTTTATGAAGCTATTGGATTCGATGCT
TGTATTCTTGTGGAATATGCTGGTTTAAATCCATTTGGTGGCCTGCACTCAGATAGTATACCAAAAGCTGGTTGTCCAGTTGTGAATCTA
AGACAGACGCTTGATGATCTCACACGTAATGGTTTCTCTGTGTGCGTCGTGGAGGAAGTTCAGGGTCCAACTCAAGCTCGTGCTCGTAAG
AGTCGATTTATATCAGGGCATGCACATCCAGGCAGTCCCTATGTTTTTGGCCTTGTTGGAGATGATCAAGATCTTGATTTTCCAGAACCA
ATGCCTGTTGTTGGAATATCCCGTTCAGCGAAGGGGTATTGCATTATCTCTGTTTACGAGACTATGAAGACTTACTCTGTGGAAGATGGC
CTAACTGAAGAAGCCGTAGTCACCAAACTTCGTACTTGTCGATGCCATCATTTTTTTTTGCATAATTCATTGAAGAACAATTCCTCAGGA
ACATCGCGTTGGGGAGAGTTTGGTGAAGGTGGACTTTTGTGGGGAGAATGTAATGCTAGACAGCAGGAATGGTTGGATGGCAATCCTATC
GATGAGCTTTTGTTCAAGGTAAAAGAGCTTTATGGTCTCAATGATGACATTCCATTCAGAAATGTCACTGTTGTTTCAGAAAATAGGCCC
CGTCCTTTACACCTTGGAACTGCCACACAAATTGGTGCTATTCCAACCGAAGGGATTCCATGTTTGTTAAAGGTGTTGCTTCCTCCTCAT
TGCAGTGGTCTACCAGTCCTGTATATTAGGGATCTTCTTTTAAATCCACCAGCCTATGAGATTTCTTCAGACATTCAAGAGGCATGCAGA
CTTATGATGAGTGTCACATGTTCAATTCCTGATTTTACCTGTATTTCATCTGCAAAGCTGGTCAAGCTGCTTGAGTTGAGGGAGGCAAAT
CACGTTGAGTTCTGCAAAATAAAGAGCATGGTCGAAGAGATACTGCAGTTGTATAGAAATTCAGAGCTTCGTGCTATTGTAGAGTTACTG
ATGGATCCTACTTGGGTGGCAACTGGGTTGAAAGTTGATTTTGATACACTAGTAAATGAATGTGGAAAGATTTCTTGTAGAATCAGTGAA
ATAATATCCGTACATGGTGAAAATGATCAAAAGATTAGTTCCTATCCTATCATCCCAAATGATTTCTTTGAAGATATGGAGTTGTTGTGG
AAAGGCCGTGTCAAGAGGATCCATTTGGAGGAAGCATATGCAGAAGTAGAAAAGGCTGCGGATGCTTTATCTTTAGCCATAACAGAAGAT
TTCCTACCTATTATTTCAAGAATAAGGGCCACGATGGCCCCACTTGGAGGAACTAAAGGGGAGATTTTGTATGCCCGTGAGCATGGAGCT
GTATGGTTTAAGGGAAAGAGATTTGTACCAACTGTTTGGGCTGGAACCGCTGGAGAAGAACAAATTAAGCAACTCAGACCTGCTCTAGAT
TCAAAGGGGAAGAAGGTTGGAGAAGAATGGTTCACTACAATGAGGGTGGAAGATGCAATAGCTAGGTATCACGAGGCAAGTGCTAAGGCA
AAGTCAAGGGTCTTGGAATTGCTAAGGGGACTTTCTTCTGAATTACTATCTAAGATCAATATCCTTATCTTTGCATCTGTCTTGAATGTG
ATAGCAAAATCATTATTTTCTCATGTGAGTGAAGGAAGAAGAAGAAATTGGATTTTCCCAACAATCACACAATTTAACAAATGTCAGGAC
ACAGAGGCACTTAATGGAACTGATGGAATGAAGATAATTGGTCTATCTCCTTATTGGTTTGATGCAGCACGAGGGACTGGTGTACAGAAT
ACAGTAGATATGCAGTCCATGTTTCTTTTAACAGGTCCAAATGGTGGGGGCAAATCAAGCTTGCTGCGTTCGTTGTGTGCAGCTGCATTG
CTAGGAATGTGTGGGTTCATGGTTCCAGCTGAATCAGCTGTCATTCCTCATTTTGACTCAATTATGCTGCATATGAAATCATATGATAGT
CCTGTTGATGGAAAAAGTTCATTTCAGATTGAAATGTCTGAAATTCGGTCTCTGATTACTGGTGCCACTTCAAGAAGTCTTGTACTTATA
GATGAAATATGTCGAGGAACAGAAACAGCAAAAGGGACATGTATTGCTGGAAGTGTCATAGAAACCCTGGACGAAATTGGCTGTTTGGGA
ATTGTATCAACCCACTTGCATGGAATATTTGATTTACCCCTGAAAATCAAGAAGACCGTGTATAAAGCAATGGGAGCTGAATATGTTGAC
GGTCAACCAATACCAACTTGGAAACTCATTGATGGGATCTGTAAAGAGAGTCTAGCATTTGAAACAGCTCAGAGAGAAGGAATTCCAGAA
ATATTAATCCAAAGAGCAGAAGAATTGTATAATTCAGCTTACGGGAATCAGATACCAAGGAAGATAGACCAAATAAGACCTCTTTGTTCA
GATATTGACCTCAATAGCACAGATAACAGTTCTGACCAATTAAATGGTACAAGACAAATAGCTTTGGATTCTAGCACAAAGTTAATGCAT
CGAATGGGAATTTCAAGCAAGAAACTTGAAGATGCTATCTGTCTTATCTGTGAGAAGAAGTTAATTGAGCTGTATAAAATGAAAAATCCG
TCAGAAATGCCAATGGTGAATTGCGTTCTTATTGCTGCCAGGGAACAGCCGGCTCCATCAACAATTGGTGCTTCAAGTGTCTATATAATG
CTAAGACCTGACAAAAAGTTGTATGTTGGACAGACTGATGATCTTGAGGGCAGAGTACGTGCTCATCGCTTGAAGGAGGGAATGGAAAAC
GCGTCATTCCTATATTTCTTAGTCTCTGGCAAGAGCATCGCCTGCCAATTGGAAACTCTTCTAATAAATCAACTTCCTAATCATGGTTTT
CAGCTAACAAACGTTGCTGATGGTAAGCATCGAAATTTTGGCACAACCAATCTCTCCCCAGAACCTTCATCCGCGCTTAGATGAACTCAT
CATTCTGCTATGGAAGAGCTCAAGTTGGTGTATAAAATTTGTATTAGTTTTTGAAAATTTTCAAGGGATGAGTAATTCAACTTTCAGTGG
CTGCAGCAATTTTGGGTTAGTTTTAGCTTCTCCACATGTATATCACATCATCACCTGTGAAACTAAGGGTTAATTAAGCCTTGTAACACT
TTTGATATCTAAGTTTTAGTGTCCTGACAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
msh1	DNA mismatch repair protein 1

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P124879 (1135 Aa)

VLGYGKKRRRFSSPLAFTVPFPPSTTSPAFLIFLSTYSVPRADTLREGGKFFATTAKKLKQPKSIPEEKDYVNIMWWKERMEFLRKPSSA
LLAKRLTYCNLLGVDPSLRNGSLKEGTLNSEMLQFKSKFPREVLLCRVGDFYEAIGFDACILVEYAGLNPFGGLHSDSIPKAGCPVVNLR
QTLDDLTRNGFSXVRVEEVQGPTQARARKSRFISGHAHPGSPYVFGLVGDDQDLDFPEPMPVVGISRSAKGYCIISVYETMKTYSVEDGL
TEEAESPNFVLVDAIIFFCKFIEEQFLRNIALGKFGEGGLLWGECNARQQEWLDGNPIDELLFKVKELYGLNDDIPFRNVTVVSENRPRP
LHLGTATQIGAIPTEGIPCLLKVLLPPHCSGLPVLYIRDLLLNPPAYEISSDIQEACRLMMSVTCSIPDFTCISSAKLVKLLELREANHV
EFCKIKSMVEEILQLYRNSELRAIVELLMDPTWVATGLKVDFDTLVNECGKISCRISEIISVHGENDQKISSYPIIPNDFFEDMELLWKG
RVKRIHLEEAYAEVEKAADALSLAITEDFLPIISRIRATMAPLGGTKGEILYAREHGAVWFKGKRFVPTVWAGTAGEEQIKQLRPALDSK
GKKVGEEWFTTMRVEDAIARYHEASAKAKSRVLELLRGLSSELLSKINILIFASVLNVIAKSLFSHGVKEEEEIGFSQQSHNLTNXQDTE
ALNGTDGMKIIGLSPYWFDAARGTGVQNTVDMQSMFLLTGPNGGGKSSLLRSLCAAALLGMCGFMVPAESAVIPHFDSIMLHMKSYDSPV
DGKSSFQIEMSEIRSLITGATSRSLVLIDEICRGTETAKGTCIAGSVIETLDEIGCLGIVSTHLHGIFDLPLKIKKTVYKAMGAEYVDGQ
PIPTWKLIDGICKESLAFETAQREGIPEILIQRAEELYNSAYGNQIPRKIDQIRPLCSDIDLNSTDNSSDQLNGTRQIALDSSTKLMHRM
GISSKKLEDAICLICEKKLIELYKMKNPSEMPMVNCVLIAAREQPAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMENAS
FLYFLVSGKSIACQLETLLINQLPNHGFQLTNVADGKHRNFGTTNLSPEPSSALR

SignalP predicts non-secretion with a score of 0.173

IPR007695 DNA mismatch repair protein MutS, N-terminal
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR000305 Excinuclease ABC, C subunit, N-terminal
IPR001093 IMP dehydrogenase/GMP reductase

Prediction based on longest six frame method

>SGN-P251367 (1137 Aa)

MYWVTAKNVVVSVPRWRSLSLFLRPPLRRRFLSFSPHTLCREQIRCVKERKFFATTAKKLKQPKSIPEEKDYVNIMWWKERMEFLRKPSS
ALLAKRLTYCNLLGVDPSLRNGSLKEGTLNSEMLQFKSKFPREVLLCRVGDFYEAIGFDACILVEYAGLNPFGGLHSDSIPKAGCPVVNL
RQTLDDLTRNGFSVCVVEEVQGPTQARARKSRFISGHAHPGSPYVFGLVGDDQDLDFPEPMPVVGISRSAKGYCIISVYETMKTYSVEDG
LTEEAVVTKLRTCRCHHFFLHNSLKNNSSGTSRWGEFGEGGLLWGECNARQQEWLDGNPIDELLFKVKELYGLNDDIPFRNVTVVSENRP
RPLHLGTATQIGAIPTEGIPCLLKVLLPPHCSGLPVLYIRDLLLNPPAYEISSDIQEACRLMMSVTCSIPDFTCISSAKLVKLLELREAN
HVEFCKIKSMVEEILQLYRNSELRAIVELLMDPTWVATGLKVDFDTLVNECGKISCRISEIISVHGENDQKISSYPIIPNDFFEDMELLW
KGRVKRIHLEEAYAEVEKAADALSLAITEDFLPIISRIRATMAPLGGTKGEILYAREHGAVWFKGKRFVPTVWAGTAGEEQIKQLRPALD
SKGKKVGEEWFTTMRVEDAIARYHEASAKAKSRVLELLRGLSSELLSKINILIFASVLNVIAKSLFSHVSEGRRRNWIFPTITQFNKCQD
TEALNGTDGMKIIGLSPYWFDAARGTGVQNTVDMQSMFLLTGPNGGGKSSLLRSLCAAALLGMCGFMVPAESAVIPHFDSIMLHMKSYDS
PVDGKSSFQIEMSEIRSLITGATSRSLVLIDEICRGTETAKGTCIAGSVIETLDEIGCLGIVSTHLHGIFDLPLKIKKTVYKAMGAEYVD
GQPIPTWKLIDGICKESLAFETAQREGIPEILIQRAEELYNSAYGNQIPRKIDQIRPLCSDIDLNSTDNSSDQLNGTRQIALDSSTKLMH
RMGISSKKLEDAICLICEKKLIELYKMKNPSEMPMVNCVLIAAREQPAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMEN
ASFLYFLVSGKSIACQLETLLINQLPNHGFQLTNVADGKHRNFGTTNLSPEPSSALR

SignalP predicts non-secretion with a score of 0.26

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101422	Agenet - Molecular Function: RNA binding (GO:0003723)	208
2	124708	DNA mismatch repair protein MutS N-terminal - Molecular Function: damaged DNA binding (GO:0003684) - Molecular Function: ATP binding (GO:0005524) - Biological Process: mismatch repair (GO:0006298) Excinuclease ABC C subunit N-terminal - Molecular Function: nuclease activity (GO:0004518) - Cellular Component: intracellular (GO:0005622) - Biological Process: DNA repair (GO:0006281) DNA mismatch repair protein MutS C-terminal - Molecular Function: damaged DNA binding (GO:0003684) - Molecular Function: ATP binding (GO:0005524) - Biological Process: mismatch repair (GO:0006298)	3
5	135052	DNA mismatch repair protein MutS N-terminal - Molecular Function: damaged DNA binding (GO:0003684) - Molecular Function: ATP binding (GO:0005524) - Biological Process: mismatch repair (GO:0006298) Excinuclease ABC C subunit N-terminal - Molecular Function: nuclease activity (GO:0004518) - Cellular Component: intracellular (GO:0005622) - Biological Process: DNA repair (GO:0006281) DNA mismatch repair protein MutS C-terminal - Molecular Function: damaged DNA binding (GO:0003684) - Molecular Function: ATP binding (GO:0005524) - Biological Process: mismatch repair (GO:0006298)	3

Preceding Unigenes (3)

Unigene	Build
SGN-U226420	Lycopersicon Combined #3
SGN-U235768	Lycopersicon Combined #3
SGN-U239530	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Event Web URL: