Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582040 in the current build, Tomato 200607 #2

Unigene SGN-U318552

Unigene Basic Information

Unigene ID:	SGN-U318552
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318552
mRNA sequence:	Length: 1460 bp

>SGN-U318552 Tomato 200607 #1 (16 members)
ACTAATCACCCCCCAAAAAAGTCCCATTTTTCCCCCAATCTTGTTGTTCCAATTTTCATTGCTCTTCTGCTCAGGCAGGCAGCAGAAGCT
TGTTCACCCCCCAAAAAAGTCCCATTTTTCCCCCAATCTTGTTGTTCCAATTTTCATTGCTCTTCTGCTCAGGAGACTATGGAGGCTAGA
GTTTCGCAGAGCCTTCAGTTGTCCTCATGGATAAATTCCGATAAGGTAGTAAGGAAACCGAGTGGTTTGTTGCGTTTCTCTGAGAAGTGG
AATGAAAAACCAAGGCATCGGGTAGTTGTATCCTGCCATTTACAGCCTAGAAAAGCTGCACATTCTGATAGACGAGTACAGTTGAAAGTT
TCATGTTCTCCTCAAAATGTTCAAGCTTCAGTTCTGGAGTCAGGATGTTTCTCTGCATCAATTGATGAAATCGAGACATTAAAGAATAAA
GCAGAAGAAGTTGAAGAATATCTAGATGGACGATGTGTATACCTTGTTGGAATGATGGGCTGCGGAAAAACAACTGTGGGCCGGATTTTG
GCAGAAACACTGGGATATTCCTTTTTTGACTGTGACAGGCTGATAGAGCAGGCTGTTGGTGGAATTACTGTAGCTGAAATCTTTGAGCTT
CGCGGAGAGAGCTTCTTCAGGGATAATGAGACTGAGGTATTGCACAAACTATCTTTGATGCATCGGCTTGTTGTTTCAACGGGTGGAGGT
GCAGTTGTTCGTCCCATTAATTGGAGGCATATGCACAAGGGTATTAGTGTTTGGTTAGATGTTCCTTTAGAAGCTTTGGCCAAGAGAATT
ACCACGGAAGGAACTAAATCTCGCCCCCTTTTACATGAAGAATCAGGAGACGTTTATGATACGACTTTGAAGCGGTTAACTACTTTAATG
GAGACGAGGGGTGAAAATTATGCCAATGCAAGTGCCAGGGTTTCACTAGAAAATATTGCATTGAAAAGGGAAAAAGATGTCTGTCATATT
ACACCTGCTGAAATTACTTTAGAGGTTCTTATACAAATTGAGAACTTCTTAAAGACACAAAAGAGCGTAGTTGTGCTATAAGCTTTTTCA
CTACCAATCGTGTGGAGGTGGATGGTTTGGTGCTCTACTCTCTTGACCAGGGTACGATTTTAGGTGTTCGAGACAATTGAGGTTTTGGTA
ATGTTTTGTTTCTGTTATGCACTGGATATGTAATTGTACATAATCAAAACCAATTTTGGAACTGTAGTGTATCCTAAGCGCCCAATTGTT
GTATACTAAGAATGCAAACTCAGTAGTTATTTCGTTTGTTTCAAAGTTTGTAACAGAAATAAATACCCAAATTTCCAATAATTTCAAGCT
CCCATTTACATCACACAGATCAGCTGTTTTTCATTTAGTTTAAGCCATGGTAGTGGAAATGAAGTGGTATTTCATTTCTTTTGTGAGAAC
ATTTTAATGAAAAGAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X63560	shikimate kinase precursor

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102687	Shikimate kinase - Molecular Function: shikimate kinase activity (GO:0004765) - Molecular Function: ATP binding (GO:0005524) - Biological Process: amino acid biosynthesis (GO:0008652)	11
2	123266	Shikimate kinase - Molecular Function: shikimate kinase activity (GO:0004765) - Molecular Function: ATP binding (GO:0005524) - Biological Process: amino acid biosynthesis (GO:0008652)	4
5	139513		2

Preceding Unigenes (2)

Unigene	Build
SGN-U217352	Lycopersicon Combined #3
SGN-U241100	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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