Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581601 in the current build, Tomato 200607 #2

Unigene SGN-U318441

Unigene Basic Information

Unigene ID:	SGN-U318441
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318441
mRNA sequence:	Length: 2053 bp

>SGN-U318441 Tomato 200607 #1 (16 members)
CTAGAGATGTGGCTAAAATGTAGTACAAGTTCAACTGGTATGCGTTATCGACACATGCTGTTCACGTGCTTCTACTTCAGGTTTTGGTCT
CACCGTCGACAGACTTAGATCTCCCTTGCCGTAACAACTCTTCCTTCTTCCCGGCGAACTTCACTCTCTTCTCTCTCTCTCATCTCAGTC
AGTATTCCAGCAGTAAACATGATGGGATATGAGAATCAAGAGTCCCACCTTTATGCATCCAAAAAGGAGATGGAATCCCTGGTACTCGAC
GACGATTCTCCCAACGGCACTTCTCATCCTTTCTCCGATCCACTTTCATCATCATCATCTCTTCCTTTCGCTGAAATCCCTACTGACCAA
GGTCAAACCCCTAATTCTTCCTTCAATTCCATCCTCGAACCTCCTTCTTATGCTGAGGCTATTTTCAGATCCTTTGACGCTGATCACTCC
TCTCCTCAACTCAACGGCGCTCATGATCACTCTATCGCTTCTCCTTCTTCACTTCCATCCTCCGACGACTTTTTGACCATTACCGTTTCC
GATCCACAGAAAGAGCAAGAGTTGTCCAATTCTCTAGTTCCTGGGGGGACTGCTTATGTTACCTACCTAATTACTACCAGGACGAATTTA
CCGGAATTTGATGGAACTGAATTTAGTGTGAGGAGGAGGTTTAGAGATGTGGTCACTTTGTCCGACCGATTAGCTGAGTCGTATAGAGGT
TTTTTCATTCCGATAAGACCGGATAAGAGTGTTGTTGAGAGTCAGGTGATGCAGAAACAGGAATTTGTGGAACAGAGGAGAGCAGCACTG
GAGAAGTACCTCAGGAGATTAGCTGCGCATCCTGTGATAAGGAGGAGTGAGGAGCTAAGAATGTTTTTGGAGGCGAATGGGAAGCTTCCG
CTGGTGAGGACAACAGATGTGGCATCCAGGATGTTGGATGGGGCAGTGCAGTTACCCAAGCAGATTTTTGGTGAGACAGCAGGGGGAATG
GTGGATGCCAATGAGGTAGCTCAGCCTGCCAAGGGAGGTAGGGACCTGTTGAGAATCTTTAGGGAGTTGAAACAATCTGTGTCAAATGAT
TGGGGTGGTGTGAAGCCACCTGTAGTGGAGGAGGATAAGGAGTTATTGGAAAAGAAGCAGAAGTTGCATGATTTTGAGCAGCAGCTCAGC
AATGTGTCTCAGCAGGCCGAAGCACTTGTAAAATCTCAGCAGGATATTGGAGAAACCATGGGCCAAATGGGCCTAGCTTTTGTCAAGTTA
ACAAAGTTTGAGACGGAGCGAGCTGTTTATGATTCACAAAGAACAAGGGCTGCAGATATGAAGAATGTGGCAACTGCTTCTGTTAAGGCA
AGCAGACTATATAGGGAGCTAAATGCTCAAACTGTCAAACATTTGGATAAGCTCCATGAATACCTTGGAGTGATGTTAGCTGTGAACAAT
GCATTTTCCGATAGGTCAAGTGCTCTTTTGACAGTACAGACATTGTTGTCTGAGCTGTCATCACTAAATTCGAGGATCGAAAAACTTGAA
GCTGCTGCGTCTAAGATATTTGGTGGGGACAGGGCCAGAATTCGCAAAATAGAAGAGCTCAAGGAAACACATAGAGAAACTGAAGATGCC
AAAAGTTCTGCTGTGAGGGAGTATGAGCGGATCAAGGAAAACAACAAGAGTGAGCTTGCGAGATTTGAGAAGGAACGACGTGATGACTTC
TTGGGAATGTTGAGAGGATTTGTTGTCAATCAGGCAGGATATGCGGAAAAGATGGCGAATGTTTGGGAGACGGTGGCAGACGAAACAAAG
GGATATGCAAAACATGGTAGCTGAGAAGTTGCTGTATATAATGGCCTTTAGCATCTGCCTTTCTTTTATCTATTTTTAGTCCCTTTGTTT
TGTATTGTACTTTATTTGTATACAAGCTTAGAGACATGTTCATATCTTAGGCATAGATGTTTGATCCAACATATTTTTCCTCGTAGAGTT
CTAATTGATAACATGTGGGAATTTTCATTTAAAAAAACTTTCCCCAGAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102552	Phox-like - Molecular Function: protein binding (GO:0005515) - Biological Process: intracellular signaling cascade (GO:0007242) - Molecular Function: phosphoinositide binding (GO:0035091)	13
2	120818	Phox-like - Molecular Function: protein binding (GO:0005515) - Biological Process: intracellular signaling cascade (GO:0007242) - Molecular Function: phosphoinositide binding (GO:0035091)	8
5	131069	Phox-like - Molecular Function: protein binding (GO:0005515) - Biological Process: intracellular signaling cascade (GO:0007242) - Molecular Function: phosphoinositide binding (GO:0035091)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U217230	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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