Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564414 in the current build, Tomato 200607 #2

Unigene SGN-U317889

Unigene Basic Information

Unigene ID:	SGN-U317889
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317889
mRNA sequence:	Length: 1572 bp

>SGN-U317889 Tomato 200607 #1 (18 members)
GAAAACTAAAAGAGAGAAAAAAACGAATGTTAAAGAGCAATAAAACGGCGTCGTGTGAAGCTGCATTATCTTCTCCATTGCTGCTTCTGA
GCTGAACGAAATGGCTTCAACGTTATCTTCTCGTCTCCCACGTCTTCCTTCCAAAACGGTATTCCCACATTCTAACTCCGGTTCAACTCT
CCTCCACTTCACATCCAAAACCCGGTTCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTT
GCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCT
CCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAGGTTCTGTTGGTCGCTGATTTTGGGCCGAAGATTACCAT
AAAGATTGTGGAGAGCTTGCGGGAGGATATATATGCAGGGAAAATCAAATCAGGAAGTGAGATAAAAAGTGTTCTAAAGAAGAGTATCTT
GGATCTATTGACTAGTAAAGCACCTAAAACAGAACTCAGTCTGGGCTTCAGGAAACCAGCTGTAATCATGATTGTGGGTGTCAATGGAGG
TGGGAAGACAACATCTCTTGGAAAGTTGGCAAATAGGTTGAAGAGAGAAGGGGCAAAGATACTATTAGCAGCTGGTGATACATTTAGAGC
AGCTGCTAGTGATCAGTTAGAAATCTGGGCTGAAAGGACTGGTTGTGAGATTGTTGTTGCTGAAAAAGAGAAAGCTAAGGCATCGTCAGT
TATTTCACAGGCTGTTAAAAGAGGAAAGGAAGAGGGTTTCGATATTGTTTTATGCGACACATCTGGCCGTTTGCACACCAACTATAGCTT
GATGGAGGAATTGGTGGCATGCAAAAAAGTTGTCAGTAAAATTGTTAATGGTGCACCTAATGAAATCTTGCTAGTACTGGATGGAACGAC
TGGTTTAAATATGCTTCCTCAAGCAAGAGAGTTTAATGAGGTTGTTGGAATCACTGGGTTAATATTGACTAAACTTGATGGTTCTGCTCG
AGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGTATTCCTGTAAAATTTGTAGGTGTTGGGGAAGGTGTAGATGACCTCCAACCATT
CAATGCTGAGGAATTTGTTGATGCTATCTTCCCATGAGGCATGATTCAGTGACAGTTTCTCCTATATTCTAAGTGAACTCTCTGGTGTTA
ACAAGACACAAACATTTTGGCGAGAGAGGAGTAATGAGACATTAGAAATTTTTGTCTTTAACAGAACGTGTGCCTTATGCTCCTTTGTTT
ATCTAGATCTGCTCTATTTCATTGAGGATGTGTCATCAGAAGAGACACTTAGTTGTCCAGTACGACTGATGCCATTAGTTGCATCGCCTT
TTTTTAAAATCAAAAGATCAGTGTCATCTCCTTGTCATTGTTGCAGTATTAAGTAGTAATACAGCATTGTAGTTAAAGTGGAGTTTCATT
GGACACACAGCTAATACAAGATTGATTTGCATGAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101860	GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)	32
2	123370	Cell division transporter substrate-binding protein FtsY - Molecular Function: GTP binding (GO:0005525) GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	4
5	133568	Cell division transporter substrate-binding protein FtsY - Molecular Function: GTP binding (GO:0005525) GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U215997	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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