Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578949, SGN-U580939, and SGN-U592764 in the current build, Tomato 200607 #2

Unigene SGN-U317732

Unigene Basic Information

Unigene ID:	SGN-U317732
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317732
mRNA sequence:	Length: 1354 bp

>SGN-U317732 Tomato 200607 #1 (20 members)
AAACCTGTTCATCTCATTTCTGCATCACACTTGATCAGCTTCTTTTAACTCTGCTTCAAATCTATTGATTTTTCCAATGAATTGCCTTCA
GAATCTTCCCAGATCCTCTGGTTTACCACTGAGAAGTTTCACAGGCAACTCAAGAAAGCTTTATTCCACTGTTGTTTCACTGGGGATGAC
AAAATTTGCTGATCAGCGTCTAAGTATTGTGGCACAGGTTGTATCTGGTCCAGAATCTACTACAGAGAAGGATGAGGAAAAATCCGATAC
ATACAGTCATGACATGACTGCAGCTATGGGAGCTGTCTTGACTTATAGGCATGAGTTAGGAATGAACTACAACTTCATCCGTCCAGATTT
GATTGTTGGGTCATGTCTACAGACTCCTGAGGACGTGGACAAGCTTCGGAGCATTGGAGTAAAAACTATATTTTGCTTGCAACAAAATCC
AGATCTTGAATACTTTGGGGTTGATATCAATGCTATTCGTGAATACGCCAACAAATGTGGTGCTATTGAACACTTGCGTGCCGAAATAAG
GGATTTTGATGCATTTGATTTGAGGTTGCGGCTTCCAGCTGTAATAAGCATATTGAACAAAGCCATCAATAGAAATGGAGGTGTGACTTA
CATACACTGCACAGCTGGACTTGGCAGAGCTCCCGCAGTTGCGTTGACGTATATGTTCTGGGTTCAAGGCTATAAGCTTAGTGAAGCTTT
CGATTTACTCATGAGCAAACGCTCCTGTTTTCCGAAACTAGATGCCATCAAAAGTGCCACAGCAGACATTCTTACAGGCCTTAAAAAAAT
GCCCGTAACGTTAACATGGCATGGTGATAATTGTACTACAGTGGAAATATCTGGACTTGATATTGGTTGGGGTCAGAGAATACCTTTAAA
GTTTGACGAGGAACGAGGTTTGTGGACTCTCCAGAAGGATTTGCATGAAGGAAAATATGAATACAAGTACATTGTAGACGGTGAATGGAT
ATGCAACGAGTTTGAGCCGATCACTTCTCCCAACAAAGATGGACATGTCAACAACTATGTAGAGGTTCTTGACGAAAATCCAGACAACAT
CACTAGTGCAGCAGTACGAAAGAGGCTCACCGGTGATGACCCTGATCTTACCTCAGATGAAAGGCTCATAATTGAACGATTTCTTGAAGC
TCATGCAGACGTAGAATGAAGGAATACTTATTACTTACTAGATACACTTAATAATTGTAAGCAAAGTCAATATCTGCTATATAACTCATC
CAGTTGTAATTAGTATGCAGTTTTACTTGAATGAACACTAGTTATATCATATATGTTGTAGTGAAGTAATAACATCCTTAATCTTAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ptpkis1	protein tyrosine phosphatase	protein tyrosine phosphatase

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
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Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101587	5-AMP-activated protein kinase beta subunit complex-interacting region Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138)	67
2	121769	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	6
5	132702	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U216378	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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