Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567552 in the current build, Tomato 200607 #2

Unigene SGN-U317540

Unigene Basic Information

Unigene ID:	SGN-U317540
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317540
mRNA sequence:	Length: 1232 bp

>SGN-U317540 Tomato 200607 #1 (21 members)
ATTTACCGGGAGTGCTGGCCAATCTTTTGCTTGTTTTCTGACACCTGGAATGAACATCAGACTTATTGGAGAAGCTAATGACTATGTAGG
AAAGGGCATGGCTGGAGGAGAGTTGGTTGTAACTCCCGTTGAAAATACTGGATTTGTTCCAGAGGATGCTACCATAGTAGGGAACACCTG
CTTATATGGAGCAACAGGTGGTCAAGTATTTGTCAGAGGTAAAGCAGGAGAGCGTTTTGCTGTGAGGAATTCTCTTGCTCAAGCTGTTGT
AGAAGGCACTGGGGACCACTGTTGTGAGTACATGACAGGAGGATGTGTTGTTGTGCTTGGAAAGGTTGGTAGAAATGTAGCTGCTGGTAT
GACTGGAGGTTTGGCATACATTCTAGATGAGGACGAAACATTTGTACCTAAGGTAAACAAGGAGATTGTTAAGATCCAAAGAGTGGTTGC
TCCGGTGGGTCAAACACAGCTAAAGAACCTAATTGAAGCTCATGTGGAAAAAACTGGCAGCACAAAAGGCTCTGTTATCCTCAAAGACTG
GGACAAATATTTGCCACTCTTTTGGCAATTGGTTCCACCCAGTGAAGAAGACACCCCTGAGGCCAGTGCTGAATATGAGCAACTAGCTTC
TGGGCAGGAGGTCACTTTGCAATCTGCAGAAATGCCATTAAAATAAATTTAAATACCAATTATATGCACACAGGCACAACCATGACCACG
GTCTAATGAGAAGACAGTTCGTACAGGAAATTCATTTTGAATTTTTAGAATCAGATTGTCTGCAAAAGAAAACAGTGAAATCTGAGAGAG
AAATACTTAAGGATGCAAGCTTACCTTTATCAAAGAAGGGACACATATCTTTCGTGGTGCTTCAGCAGTTGTACAGTGATGATGGAGAAA
TTGTAAATTCTTGATTAATTATGGCATAGTCGTGCCTTTGCCAAGATTGCTTCACTGAAGAACTTGGAAGTTCACACAATGTTAATGCTT
CTACTAGTCCTGGCCATTAAATCTCTTTTGGTTTTTGCGTTCCATTGGGCTTTCATTCTCATGTCTAATAAGTTGTAGTAACTTATATTG
TGACTTTGACTCTGATTCAAAAATGTGTAAATTAGAACAGCAAAGATTTGCTTGTTCGGAATATATCGATATATAGCAGTGCAAAATGCT
TCTTTGATTTAAAAAAAAAAAAAAAAAAGTGGAAATTTCACAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101474	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	111
2	119344	Glutamate synthase central - Biological Process: nitrogen compound metabolism (GO:0006807) - Molecular Function: glutamate synthase activity (GO:0015930) Glutamate synthase alpha subunit C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Glutamine amidotransferase class-II - Biological Process: metabolism (GO:0008152) Ferredoxin-dependent glutamate synthase - Biological Process: glutamate biosynthesis (GO:0006537) - Molecular Function: glutamate synthase activity (GO:0015930)	17
5	129682	Glutamate synthase central - Biological Process: nitrogen compound metabolism (GO:0006807) - Molecular Function: glutamate synthase activity (GO:0015930) Glutamate synthase alpha subunit C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Glutamine amidotransferase class-II - Biological Process: metabolism (GO:0008152) Ferredoxin-dependent glutamate synthase - Biological Process: glutamate biosynthesis (GO:0006537) - Molecular Function: glutamate synthase activity (GO:0015930)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U219060	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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