Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576781 in the current build, Tomato 200607 #2

Unigene SGN-U316827

Unigene Basic Information

Unigene ID:	SGN-U316827
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316827
mRNA sequence:	Length: 2161 bp

>SGN-U316827 Tomato 200607 #1 (25 members)
CTCGGTTTTTTTTTTTTTTTTTTTTTATTTGGGTTTCCCTCTTCTTCTTTTTTTCACTCTAGCTACTGTCTCTTTGTCTTCCACAGAAAC
CCTTTCACAGCATTTGCTAGGGTTTAAGGAATCTTCGAGTACATACTGTAGTTGTTGTTAGCCTTACGAGATCAACTAAAATGCAGCCCT
ATGGAATTCAATCAATGCTGAAAGAAGGGCACAAGCATCTTTCAGGTCTCGACGAAGCTGTTCTAAAAAACATCGATGCTTGTAAACAGC
TCTCCACTATTACTCGAACTTCTCTCGGCCCAAATGGCATGAATAAGATGGTTATCAATCATCTGGACAAGCTCTTTGTCACGAATGATG
CTGCCACTATTGTGAATGAGCTTGAGGTCCAGCACCCTGCTGCAAAGATATTGGTTTTGGCCGGAAAGGCACAGCAAGAGGAGATTGGTG
ATGGAGCTAATTTGACTGTTTCATTTGCGGGGGAGCTCCTCCAAAATGCTGAGGAGCTCATTAGGATGGGGTTGCACCCTAGTGAAATTA
TCATCGGGTACAATAAGGCAATAAATAAGACAATTGAATTATTGGATGAGCTAGTTGAGGCAGGTTCCGAGAATATGAATGTCAAAGACA
AGAATGAAGTTATTTCACGGATGAAATCTGCAGTTGCTAGCAAACAATTTGGACTAGAGGATGTCCTGTGTCCCCTTGTTGCTGAGGCTT
GCATTCAAGTGTGCCCTAAAAACCCAGCGAACTTCAATGTGGATAATGTACGAGTCGCAAAGCTATTGGGTGGGGGTTTGCATAATTCCA
CCATAGTTAGAGGTATGGTGTTGAAAAGTGATGCTGTTGGGAGCATAAAGAGGATAGAGAAGGCAAAGGTCGCTGTTTTTGTTCAAGGTG
TTGATACATCTACAACCGAAACAAAAGGAACAGTTCTTATTCATAGTGCTGAGCAGCTTGAAAACTATGCAAAGACTGAGGAGGCTAAGG
TGGAGGAACTTATTAAATCAGTTGCTGATTCAGGTGCTAAGGTCATTGTCAGTGGAGCAGCGGTGGGAGAGATGGCTCTTCATTTCTGTG
AGCGTTACAAACTTATGGTATTGAAAATCAGCTCCAAGTTTGAACTCCGCCGTTTTTGCCGTACCACTGGGGCTGTTGCACTTTTAAAGC
TTAGCCAGCCAAATCCAGATGACCTTGGCCATGTGGATTCTGTTTCAGTGGAGGAAATTGGCGGTGTCAGGGTTACAGTTGTGAGAAATG
AAGATGGTGGAAATTCTGTCTCCACTGTTGTTCTGCGGGGAAGCACTGATAGTATCTTGGACGACCTTGAAAGAGCCGTTGATGATGGTG
TAAATACCTACAAGGCAATGTGCAGGGATAGTCGGATCGTACCTGGAGCTGCAGCTACTGAAATTGAGCTGGCCAGAAAGCTGAAAGAAT
TCTCTTTCAAAGAGATGGGGTTGGATCAATATGCAATAGCTAAGTTTGCTGAAAGTTTTGAGATGGTTCCTAAAACGCTAGCTGAGAATG
CTGGCCTCAATGCGATGGAGATCATATCATCCTTGTATGCTGAACATGCATCTGGAAATGTCAAAGTGGGCCTTAACTTGGAGAAAGGTG
CCTGTGAGGATATCTCTGGCTTGAGTATATGGGACCTCTATGTTACCAAATATTTTGCTCTAAAATATGCTGCTGATGCTGTCTGCACTG
TGCTTCGGGTAGACCAGATTATAATGTCAAAACCAGCGGGAGGTCCAGGCAGGAGAGAACAACCTGCAGGGATGGACGAGGATTAATCTT
TATTCTCCATCTTTCTCACATTCCTTTCTGCTGATAATGTTTTCTTTTGCATGGTTTGTGGATTCTTCTTTTTCTTGTAATTTTTACTTT
TGGAGTATTTTCTTGTTAGATGGCAGAGGTTTGGCTCAAGAATTTTGTTGCTCTTGACAGTATTAAGTCTCTATTGTGTATTTTGATTTG
CTTAGGTAAATGCCATGTAATGGTATTAGGCAATAGTTTCGCTGGTCGACGTCGATTATTGGAAAACTAGCTAGTTGGTGTCGTTTTTCT
GTAGCAAAGTTCTAATTTATGTGATACTACTCTATTCTGAATCATAAGATCATCTTTCCACAAATTACATAAAAAAAAAAAAAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	132599	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) T-complex protein 1 theta subunit Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215889	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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