Sol Genomics Network

Notice: the solgenomics has been unstable, we apologize for the inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U565150 in the current build, Tomato 200607 #2

Unigene SGN-U316738

Unigene Basic Information

Unigene ID:	SGN-U316738
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316738
mRNA sequence:	Length: 1425 bp

>SGN-U316738 Tomato 200607 #1 (24 members)
GGCGATTGGCGGCCAATCGGCCGAATTGAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGG
AGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGTGAATGCCGCTCCA
AAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGAT
CGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGAGATATTCTCCAGTTGGACAC
ACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATAC
AGGCGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTA
AGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGAT
TTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTC
ATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGA
TAGGTTTCCTATCCTATTACGTACAATATTATTGATAAAGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATT
CAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTC
TGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAGGCGAGTAACTTGAGGCTATCAGATCCCAAAAAAGGGCACTGTGATT
GATTATATAGCTATGAATCAACTGCCAAATCATATGCAGTTTTGATAATGCATTGTGTACTATGCATACTGCACCCACTGAGCCTTCTCT
CTTCCCCCCTGCCCCTTCTATAAATGGGGAGGAAATTGCAGGGTGGGGAATCAAAACCTTACAAACAAGGTGAAAGTTCATTCACAACTC
AATGACCCCTAGATCATGAATTTCTCTCTATAGTTGACCATAGAGTGGTCCTCTTTTTCTGCTGAAGAATGTTTGTGTCCTAGAGGAACG
GATTCAAAGAGCAACGCCATGATGTGGTTTTTAGTCGTGGAGTTATTACCGCCATGGGCATCACCATGCTGATAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103828	HAD-superfamily phosphatase subfamily IIIC	5
2	122263	HAD-superfamily phosphatase subfamily IIIC	5
5	132465	HAD-superfamily phosphatase subfamily IIIC	5

Preceding Unigenes (2)

Unigene	Build
SGN-U215792	Lycopersicon Combined #3
SGN-U215793	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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