Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585333 in the current build, Tomato 200607 #2

Unigene SGN-U316680

Unigene Basic Information

Unigene ID:	SGN-U316680
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316680
mRNA sequence:	Length: 1035 bp

>SGN-U316680 Tomato 200607 #1 (26 members)
AAAGACGAAGAAGAAACTTCCAGAAGCTCATAGAAATGGTGTCGATTGAACAAGTAGAATCACCGGCGGCCGGTAAAACTTCGACGGCGG
CAGAAGCACCGTCTGGTTACGTGTCGGATGGATACGAGACTGCGAGCGATTCGGAACTGAATGGAGCCGAGAATGGAAGTAATAGGGAAT
CTGAGAACACGATCAATACAGCGTCGTCTTCATCTGATGGAGATTTTTTGAAGGAGAAGACGCAGGAGCAGCAGCCTGAAGTAAATCAGG
AACAGTTGAATGAGAAAGCATTGGCTCAAGCAAATGATGCGAAAGTTGAAGGCAATGCATTGTTTAAGGATGGGCTTTATGAAGAGGCAT
TGTCGAAATATGAGCTAGCTTTGCAAGTCGCAGCAGATATTCCTTCAAGTACTGAAATTCGTTCAATATGCCATGCTAATCGAGCAGCTT
GTTTCACCAAACTGGGGAAACATGAGGAGACGATCAAGGAATGCACAAAAGCATTAGAACTAAATCCTACATATATAAAGGCTCTGGTTA
GAAGAGCAGAGGCACATGAAAAGCTTGAACACTTTGAAGAGGCCATTACTGACATGACAAAAATCTTGGAATTGGAACCCTCACATGACC
AAGCTAGGAGAACTGTGATACGTTTAAAGCCATTAGCTGATGAGAAGCGAGAAAAGATGAAAGAGGAGATGATTGGCAAGCTCAAAGAAA
TGGGAAATTCCATTTTGGGTCGATTTGGTATGAGCGTTGACAACTTCAAAACAGTTAAAGACCCAAACACCGGTTCCTACTCTGTTCAAT
TTCAGAAGTGATGAGGGTTTCTCTCATGTTGGCGAAATTTGCATTTCTTGAATGAAAGATTTGATCAAACAGGACACATTTGGGTGTGCA
TGTTTTGAACTATGTATCACGTTATAGCTTTTGAAGTATATAAGTGTTGGCCAAAAACTTGATATTTTAGATTTCTATACTGTTATAGAA
GCAGATGGCTTGTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ddtfr5	ripening regulated protein (DDTFR5)

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101370	Jacalin-related lectin	591
2	122606	Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	5
5	132802	Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215764	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: