Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585458 in the current build, Tomato 200607 #2

Unigene SGN-U316387

Unigene Basic Information

Unigene ID:	SGN-U316387
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316387
mRNA sequence:	Length: 2581 bp

>SGN-U316387 Tomato 200607 #1 (25 members)
TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCA
AAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTC
ATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTC
ACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTT
TTTGAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAG
AAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAAC
GATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGT
CGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGA
AGAGCTTGCAGGAGCGTAGAGAGCGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTAC
TGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTG
GAAAGGGTGCATTTGGGGAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGC
TTCGTAGAGGCCAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCT
TCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAG
AAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGAGATATCAAGCCTG
ATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGG
ATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGC
ATTGGCAGAAGAATAGGAGGATGCTTGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATG
GATGTGAATGTGATTGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCA
CCTGTAGAAAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAAC
TCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAAC
TTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGGCGACAATCAAA
TTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGA
TTGTGAATGATAACGATGTTTCTCAAATGGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTG
AGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAAC
AACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAA
GTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCT
GGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGT
AATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTAT
TCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118461	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	115
5	129249	Protein kinase-like Protein kinase C-terminal - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	28

Preceding Unigenes (3)

Unigene	Build
SGN-U215768	Lycopersicon Combined #3
SGN-U215769	Lycopersicon Combined #3
SGN-U233345	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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