Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576688 in the current build, Tomato 200607 #2

Unigene SGN-U316341

Unigene Basic Information

Unigene ID:	SGN-U316341
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316341
mRNA sequence:	Length: 1058 bp

>SGN-U316341 Tomato 200607 #1 (24 members)
ATCGGCCGAATTGGGAAGAACAACAACTACCAAAATTAAGAGCACATTTTCCTAATTAAAGTAATAAATTTCGCTTTCATTGCCAAATAT
CTTGTTTGATTTTGATTACCCCATTTAATTAATTTTTTTTTTGACTTATATATGCATAGGTTAGATAGAATAAAAAAATGCTGAGTTTCA
CCAATTTAGCTGCTCTTTTCTTTCTTGTTCTTGCTTTGTTCTTGTTCTATAGATACCCATCTTTTTCTCTTATGGCTGAAGGATCACCAA
AATCTATTTATGATTTCACTGTGAAGGATATACAGGGAAATGAGGTACCTTTGAGCAATTATAGGGGAAAGGTTCTCCTTATTGTCAATG
TTGCATCAAAATGTGGTTTAACAGATTCAAACTACAAGGAGCTGAATATTTTGTATGAGAAGTACAAAGATCAAGGTTTTGAAATTTTAG
CATTTCCTTGTAACCAGTTCCTGTGGCAAGAACCCGGAACAAATGAGGAGATTCAGCAAACTGTATGCACCAGGTTCAAAGCTGAATTCC
CTGTATTTGAAAAGATTGATGTGAACGGGGATAATGCTGCACCACTTTACAAGTTCTTGAAATCAGAAAAAGGCGGTTTCCTTGGAAGTG
CTGTCAAGTGGAACTTCACCAAATTCCTTGTGGACAAAGAAGGAAAGGTTGTGGAACGATATGCACCCAAGACACCACCTCTTCAGTTTG
AGAAAGACATAAAAAATCTGTTGGGTGTGGCTTGAGCACTACAGGTGTGAAAGTTCAGCATATGTATTGACCTTCAGTTGGAAGTGCTTT
CATGGTTCTATCTTTTTCCTTCTTCCCTGCCTACGAAACAAGCGAGCTTGTACCCCACCCCCTTAGTTTTTCCTTGTTGATGTACTTTGG
TTGTGTAAACTCGTTCATTGCCATGAATTTGTAATAAAAGTTGCATAGTAGTTGTTTTAATGACTCGGGACTGTAGTTGCTCGATATACA
AGTATGTTATCGCCTTAATAATAAGAAATAAGTTGTGTGCAGGATGTCTTGCGTAGGTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY301280	phospholipid hydroperoxide glutathione peroxidase	phospholipid hydroperoxide glutathione peroxidase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOS	suspension cultures	8026	6
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101728	Thioredoxin-like fold Thioredoxin fold Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979)	43
2	118635	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	41
5	129121	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	39

Preceding Unigenes (1)

Unigene	Build
SGN-U216797	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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