Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583269 in the current build, Tomato 200607 #2

Unigene SGN-U316161

Unigene Basic Information

Unigene ID:	SGN-U316161
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316161
mRNA sequence:	Length: 1656 bp

>SGN-U316161 Tomato 200607 #1 (30 members)
CCGGCTGAGAGTACGGTGGAAGAGGCTGAGAGCAATGGCCGGCGACGGTTTACCGTCGAATATGACTGGAATGTCTAAAGTAGAGTTATA
CGATGTCATGTCTCAGATGAAGGTATTGGTGGAACAGAACCAGCAACAAGCAAGGCAAATTCTCATCCAAAACCCTAGCTTGACTAAAAC
ACTCTTTCAGGCACAAATAATGCTTGGGATGGTGCAGCCCCCACAAGTGATACCAACCATCCAGCCAGCAGGAGCATTGAATATTCAGCC
ATCAGTATCTCAGCTTCCACAACCAATTGTTCAGGCTACTCCATCGTTGCCAGGGCATATTGGCATTCAGGAGCAAACAAGAAAGCAGCA
GCAGAATCAAGCTGCTCCAACAGTGCCATCCGCTTCTCTTCCACCCTCGAACCTTCAATCCACATCCGTGCCATCTCATACATTGCAGAC
AGTGCAGCAGCAGAAAGGACTTATTGGTGCTCAAGCCACACCAATCTCTTTACCACAAACCTCTCAAGTTCCTAATATGTCCCAGCTTCC
TCGTCATTCTGCTCCACCGCTGCCATCTCATCTTCAACAACAGATGCATCCAGCATCCCCCAAGTTGGAGCAACCAATGCAAACTAGTGT
AAACCAACACCTGGCTATGCAACCACAGCTACCACCACAAGTGAGACCATCAATGCAACCCTTCCCCCATCAAGTTCACCCTCACATGGG
GCCCAATGCTGGTTATCCACAATCTGGGGCAACTCAGCACCACCATTCACAACCTGCTTATCATCCTGCAATGAGGCCTCCAGCAAGCAT
GGGACCTTCTTTTCTACCGGGACAACCACCTGGTCAAAGTCAGCTTCCACCCCAGCCTCTATATCAGATGGGAGGTTCACATTTGAGACC
AGAATTCAATCAAGTTGGAAATTCAATGCAAGCAGATCGAGGATCTCCTTGGATTCCCAGCTTACCAGAGAATACATCAGGAACACAGCT
CCCAGGGCCACCATCATTCCCTGCACAGATGGGCCCGGGCAGTCAGCCTCCTAGACAAGGAGCACTGTCCCCAGAGATGGAGCAGGCACT
TCTTCAGCAAGTAAGGAGTCTGACCCCAGAACAGATTAACATGCTGCCTCCGGAGCAAAGGAATCAAGTGCTTCAGTTACAGCAAATGCT
CCGTTAATCAGAAGCGAGTGCTGCAAAATACGGTTCTGCCAAGAAACTGAAATATCCTCATCTGGCTAATCGATTTTTCTATTTATCAAT
CACCATTGGGTAGATGGACAGTGCGCTCCTTGTTCAATGGTGTTTTTTTTCCCCTTTGTTAAGGTTATTTTTCCTTAGCTCAAGTCGGGT
TGCCTGTCATGTTGCTAGCAAATCGTAAAACGTCGATGGAGAGCTTCTTTGGTGCATATATATCCCATCTTCTCCACCTGGATGCTCTCC
ACTTTCTTTTTTATGTAATGTCACTTATATGTATCATGTCACTGTATTAGAATAGCCTAATGCCCTCAATTATGAGATTGTGAAACAGTA
TAGCCCCTTCCCTTAATCTTGTATCCAAAATTTCCAGACACATTTTGGTTTTGCAGATGCATCTTGTGAACAGTTTGCTGGACTTAGTGG
AAGGTATAGTTGGATATTCAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	121549	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6
5	132431		5

Preceding Unigenes (1)

Unigene	Build
SGN-U215801	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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