Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U582643 and SGN-U582644 in the current build, Tomato 200607 #2

Unigene SGN-U316130

Unigene Basic Information

Unigene ID:	SGN-U316130
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316130
mRNA sequence:	Length: 1271 bp

>SGN-U316130 Tomato 200607 #1 (30 members)
TCATTTTCCGACGAGATTTCATCATCTAAATTCAACGGCTGTGATTATATCTTCCCCAATTTCTCTGCTTTAACCACCGGATTCGCTTTA
GCAATGGCTTCTCTTCCGATAGATTTGAAATCAAACGAGCATCCATGGATCTCCGGGTACCGATGGGTCCCACAAAACGTGGTCCCACAT
CTGCACTTGAACCCTGTCAATCCCACCTTCTTCCTGCAGGCCGAACATCTGTTCGGCTGTGCAGAAATCGGTTGGACCGCGACTGTTACA
GCGGTCACAACCTCAGGTTCTTCCTCCGCAGCTGTCGATTCCTGCAGCACCAGTATCGATGAGGTTGATGGAATCGGCAGCTGCGAAGGA
GGAAAAAGGGAATCAATAGGTTTTTGTTGTCCCCCTTTTATGTAAACTTCATTGTAACATTTGGAGCAGAAATTTTGCGTTGTTGGGCTA
CCAAAGAAACCACAGTTATTAGCGCATAATATATGTCCTTCTGGTGCTTCAAATCCATGTTCTTCCGCCATAATTATATCGATTTCTCTT
CGATATCAAAAAGCACGAAAATTAATTCAATTGTGAAAACTAAATGAAGAAAATATGAGGTGAAAGCAAATTGTGTAAAGGGCTCCATTT
CTTCTCTCTACATCGTCTTCGTCCGAGCTCTTCCCTATCAGAATTTTGCTACATTCGGATTCAAATGGCTGGCCATAGGATTGCACATGC
CACATTGAAAGGACCTAGTGTGGTCAAGGAAATAGTTATCGCAAGTGTACTTGGTTTGGCTGCTGGAAGCTTGTGGAAGATGCACCACTG
GAACGAGCAAAGAAAAGTTAGGTCATTTTATGACTTGCTGGAGAAGGGTGAAATAAGTATAGTTGCAGAAGAATAGTTTCTCAAGGATCA
TCTCCTGTGATTTGTCTCTTCAATTAAACATGGACATACTCCTATATCGAAAAAAAAATAAGTTTGCAAACCAAGTATTTCTCTGTCTAT
TTGTTGCTCCATGTTTGACTTCGAAGTTTTTGATTGTTATTGACCTGCTTGGACAGGCTGGAATGAATTTTCTTTCATAAGTTTTTAGTG
TGCCATTCAACAGGCGGACTCGTGTCCCTGTCAAAAGTATATTATTTCTCGTTTAATAGGTTCTTTCTAATAAAAGATTCACAAGAAAAT
TTATTCCCCTATCTAAAAAAAAAAATATTTGCTTAGTCTGTCTTTCGATAATTCTCTCCAACATATGTGCTATTTCTAAAAAAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
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Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101723	Zinc finger AN1-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger A20-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: zinc ion binding (GO:0008270)	43
2	128248		2
5	139946		2

Preceding Unigenes (3)

Unigene	Build
SGN-U216256	Lycopersicon Combined #3
SGN-U227417	Lycopersicon Combined #3
SGN-U233484	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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