Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578526 in the current build, Tomato 200607 #2

Unigene SGN-U315931

Unigene Basic Information

Unigene ID:	SGN-U315931
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315931
mRNA sequence:	Length: 1404 bp

>SGN-U315931 Tomato 200607 #1 (32 members)
AGATGAAGAAAAATGAAAAATGTCCAAGAAATGAGTGATCATCCATCCTCTCATTAGATAATTCCCAATTTAACCATCCTTCTATATAGT
GCTTATTCAAAACAAAGATAACATAGGAATAAACAGACAATGAAAAATCTTAGTTTAGATAATTAGTAGTAGTAACATAACATAACATAG
TTGTTATATATATATATATATATATAATATAAAAATAAAAGTAAACACTCTTTTACTTTATAAATACCTATCCCTTAGTCCAAAGTCTCT
TCCATTTTCTGCATCTACAAAATCCTCTTCATATATTATATACTAATTTGCAACCAAAAAACTTAAAAATCTTCTCTTTCCTTTCCTTAC
AAGGTGAAGTAATGGACTTCCAAAGTGATCTAACCAGAGAGATCTCACCACAAAGGAAACTAGGAAGGGGGAAAATTGAGATCAAAAGGA
TCGAAAACACGACGAATCGACAAGTAACATTCTGCAAGAGGCGCAATGGTTTGCTTAAAAAGGCTTATGAATTGTCTGTGCTCTGTGATG
CTGAGGTTGCTTTGGTTGTCTTCTCAAACAGAGGCAGACTCTATGAGTATGCCAACAACAGTGTGAAAGCAACAATCGAGAGGTACAAGA
AAGCATGCTCAGATTCCTCAAACACTGGTTCAGTATCCGAGGCCAATGCTCAGTATTACCAGCAAGAAGCCTCCAAACTGCGCGCACAAA
TTGGAAATCTGATGAACCAAAACAGGAACATGATGGGTGAAGCTCTTGCTGGAATGAAACTCAAAGAACTGAAGAATCTGGAGCAAAGAA
TTGAAAAAGGGATTAGCAAAATCCGATCCAAAAAGAATGAGCTGTTGTTTGCTGAAATTGAGTATATGCAGAAGAGGGAAGTTGATTTAC
ACAACAACAATCAGTACCTGAGAGCAAAGATTGCTGAAACTGAGAGAGCTCAGCATCAGCATCAGCAGATGAACTTGATGCCAGGGAGTT
CATCAAACTATCATGAGCTTGTGCCTCCACCTCAGCAATTCGATACTCGAAACTATCTACAAGTTAATGGATTGCAAACCAACAACCATT
ACCCTAGACAAGACCAACCCCCTATTCAACTAGTCTAATGTGCTTGAGAGATTGTCTTCTTTCTGATGTGATCTACATATAATCCACAAA
AGAAGACTGCTATTAAGCTTGAAGATTAATGGAACTTAAGTATGTATACCATATTATTAATTACTTGTTGCATGAGCTAAGACTCTTGAA
TATTGTATGTTAATTAAGTGGACATGTATTTTTTTTGCTTGGTGTACTTCCTTTTCTGCCAGTGAACTATGAAGAATTAAGCTTGTTATA
TTAAGTTCACAACTGTTTTTCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tag1	Tomato AGAMOUS 1	transcription factor

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	9
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U215004	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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