Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U583807 and SGN-U588491 in the current build, Tomato 200607 #2

Unigene SGN-U315731

Unigene Basic Information

Unigene ID:	SGN-U315731
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315731
mRNA sequence:	Length: 2401 bp

>SGN-U315731 Tomato 200607 #1 (36 members)
ACAAGTGTAGGTATATCTGGTGACAATAAATAAGGCAATCACAAAATGAAGTTAGAAATTTGACCGCGTTGATTGCTGCCTTCACAAGTA
GAGTAAACAAAGTCCGAAAACCTCCATCGTTTCATAGCCTATAGAATTTGATTGAGCTACCCCTACTTCACAAATCATCTATATATATAA
TCTACTTTTCCAGACATACCCATCTAACTATCTTTTTCTCTCTGCGCCGTTGTAGCGTTCAAGATGAGTTACAACAACGATCCGTACATA
GATGAGGATGGAGAGGCATTGGTGGATTTTGATGAGGATGTCCGATCAGATAACGAGCAACAGGAACAATTTCTTGGTGACAATCTGGAC
GATGATGATGCATGGAATCAGAGACAGCGAGAGCGGTCACCGACCCCAGTATATGATGATCTTAACAAGTCTAAGCCCAGGAAGCGGTTA
ATTAAGAAATCTTCAGCTAGAGAAAACACACCGGATATTGGGCTAGGAGATGAGGAGGATGCTTATGGTGGTGCTGCTGCTGATGACATG
ACTGGCAATATGCATGATGAGTTTGACGGCGGTGGTCCTTCATCTTCCTCTGCTGGTGGTGGAAAGAGGAAGAGGTTTGGCATGGAGTTT
AGTGAAGAGAAGAGGAAGGAGAAGAAGGGGAGAGAGAAAGGAGAGAAGAAATTTAAGTTGAGGAAAAATGGGGGTTACTCTGGAGGAAGC
AGGTTAAAGGACCAGGAGGGGGATCGGGAGATGAAGGAGATGTGGGACACCATTGCTGGTGGTGACTCTGAGGATGACCAAGAAGGTCCA
AAGAATGCCGATGATGATAACTTCATTGATGATAGTGGTGTAGATCCAGCTGACAGGTATGGAAGCGACAATGAACCACTGTCTCCCAGC
AATGCTCCACAGGCTGAAGAAGGGGAAGAGGATGACGAAATCAAGCAGCTCTTCAAGGGAGGCAAGAAGAAAAAGAAAACTGAAAAGAGT
GCAGCAGAAATTGCATTGCTAGTAGAGAATGTTATGGCTGAGTTGGAAGTTGTTGCCGAGGAGGATGCCGAACTGAATAGACATTCCAAA
CCTGCTATAAATAAACTAAAAAAACTCCCTCTTCTCATAGATGTCCTGTCTAAGAAGCAACTTCAGCAAGAATTTTTAGATCATGGAGTG
TTGACTCTTTTGAGGACTTGGCTTGAACCCCTTCCAGATGGAAGCCTGCCCAACATAAACATTCGTGCTGCGATCCTAAAGATCCTTACT
GATTATCCAATTGATCTTGAGCAGTATGATAGAAGAGAGATGTTGAAAAAGAGTGGTCTTGGAAAGGTTATTATGTTCCTCTCGAAATCA
GATGAGGAGACTACATCTAACAGGAAACTTGCCAAGGATTTGGTTGACAAATGGAGTCGACCAATATTCAACAAGAGTACACGGTTTGAA
GACATGAGAAATCTAGAGGATGAGAGAGCTGCTCAATACAGGCGGCCCTTGAAAAAACCCATGAATAAAGCATCAGGAATGGAATCCAGA
GACGATGACCTTGACTTGGCTGGATATTCACAAGGGCAAAAATCTGGTCAGTCATCTGGTAGGCAACTTACATCAAGGCCTGAAGCAATG
TCAATGGATTTTGTGGTGCGTCCACAGTCTAAGATTGATCCTGACGAAGTTAGGGCCAGGGCTAGAGCAATGGTTCAAGACCAGCGCCGA
ATGAAGATGAATAAGAAACTGCAGCAGTTAAAAGCTCCCAAAAAGAAGAAACTCCAAGCCACAAAACTGAGTGTGGAGGGTCGTGGCATG
GTGAAGTACCTCTAGGCTGTGTTTATTGTGCTTGCCCTTGTTAGGGTAAATAGCCTGTTGGCTCTGCTACACAAGGATGGGTGTTCTTCT
GAGCTTCGTATCTGGACAGTGGCTAATCAAAGTGCCTTGTGAATGTGGGATCATTTTTGAAATTAGTTTGAGGGCTTCTAGTATGTTATG
CTGATGATCAGTCGTCATTGATTAAATGGTGCCGCATGTTATCTACTTATATTATTCCTTCCTTAGCAGCTTTCTGAGGATGGCTTCTTC
CTTATAACATGTTGGTGTGTCGCTGATACCCATTAATTTTGGTTCCCTAATAAGTTTCCAAGTCATTGGTGTAATGGAAGTCATGGCTGT
TGCTATGGGTGATGCGCAACTTGGAATACTATATTATTGCCGTTTGGCATGTATTATGCTGTTTTCCTGAAGCTCTTTAGCTAGGTTTTC
TACCCTTTCATTTGCTTGTTTAGTATTATTAGCTTGTGAGTTGAGACAAAGATCTTATTCTTCTCCAGAAGGCAAATTGTACTTTTTCCT
GTTTTAGACTAAACAAAGTATTTCTCAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101589	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H2B - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	66
2	121480	IWS1 C-terminal Transcription factors TFIIS elongin A CRSP70 conserved	6
5	131684	IWS1 C-terminal Transcription factors TFIIS elongin A CRSP70 conserved	6

Preceding Unigenes (2)

Unigene	Build
SGN-U215072	Lycopersicon Combined #3
SGN-U220984	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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