Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570703 in the current build, Tomato 200607 #2

Unigene SGN-U315721

Unigene Basic Information

Unigene ID:	SGN-U315721
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315721
mRNA sequence:	Length: 2119 bp

>SGN-U315721 Tomato 200607 #1 (8 members)
GGGGATCTTCTAGGCCCTTCTTTACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTT
TCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGTGTTGCAAGAACCAG
TTCCCAAAAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCT
TCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACC
CAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGT
CGCCAATGCAACAAATGATGTTGCTGGTGATGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGT
GGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGAT
GATCAGTACATCTGAGGAAATTGCACAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGA
GAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAG
AGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGAT
CTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGA
AGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGC
TTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAAGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCT
GGGAACAAGTAAAGAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGA
ACTGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGC
TGTGTTAAAGATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGT
GGAGGAAGGAATTGTTCCAGGTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAA
GATTGGTGTACAAATTATTCAGAATGCTCTGAAGACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGG
CAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCC
AGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGTGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAA
GGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATT
GCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAA
AACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAAAA
AGAAAAAAAAAAAANCTGAGAATAGTTCTCTCTCCCTGCAGCCCGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

Preceding Unigenes (2)

Unigene	Build
SGN-U214953	Lycopersicon Combined #3
SGN-U230411	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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