Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U573379 and SGN-U596319 in the current build, Tomato 200607 #2

Unigene SGN-U315338

Unigene Basic Information

Unigene ID:	SGN-U315338
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315338
mRNA sequence:	Length: 2512 bp

>SGN-U315338 Tomato 200607 #1 (33 members)
GTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACT
CATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTT
CTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAG
CTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGT
TGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAA
ACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGG
CATCGTTTCTAAGAGCTTCCCAGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATT
GAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGG
ATACAAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGA
CCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTT
AATTGCAAATATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAG
TTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGA
GAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTG
TAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCC
CGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAA
AAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTC
CAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCATGACCACAAAGTTGGCGGAAGCGG
GCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGA
GCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGC
CAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGAT
TGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATG
GAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGT
CATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGA
TCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAA
GTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAG
GAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTG
ACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTA
ATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	16
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101451	Protein of unknown function DUF248 methyltransferase putative - Molecular Function: molecular function unknown (GO:0005554)	141
2	118453	Protein of unknown function DUF248 methyltransferase putative - Molecular Function: molecular function unknown (GO:0005554)	122
5	129392	Protein of unknown function DUF248 methyltransferase putative - Molecular Function: molecular function unknown (GO:0005554) Generic methyltransferase - Molecular Function: methyltransferase activity (GO:0008168)	22

Preceding Unigenes (2)

Unigene	Build
SGN-U214751	Lycopersicon Combined #3
SGN-U220118	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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