Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579691 in the current build, Tomato 200607 #2

Unigene SGN-U315118

Unigene Basic Information

Unigene ID:	SGN-U315118
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315118
mRNA sequence:	Length: 3560 bp

>SGN-U315118 Tomato 200607 #1 (42 members)
TGTAGAAGAGAATTAAGGCATTACCACCACTTCTGAGTTCTGCTTGGAAGAAGAAATCCTAAATCTTTTATTTGTTTATTGAATTTTGAG
TCTATGATTTGAAAATCCAAATTAGATTACTTTTGTTATCTTTTTTCCATATATACATCTTCGTCTACCTAACTTACCTTCATTTTGAAA
AAAAAAAAATTCAAATTCCATTCATTCATTTCATTTTTCCACGAAGAAACTATTGTAGCGATGCAAAATTCGGAAAATCATCACCCACAC
CATCACCATCATCACTCGGATACGGAGGTTATAGGGAATGATAGAGCGTCGTACAGTGGTCCTTTAAGCGGACCGCTGAACAAACGAGGA
GGAAAAAAGAGCGCGAGGTTTAATATACCGGAATCTACTGACATCGGAACTAGTGCAGGAGCCGGCGCCAAGTCCAATGACGATGCTTAT
GTGGAAATCACTCTCGATGTTCGTGAAGACTCTGTGGCTGTCCACAGTGTGAAAACTGCCGGCGGTGCTGACGTGGAAGATCCGGAGTTG
GCTTTATTGGCTAAAGGTTTGGAGAAGAAATCTACCTTGGGAGCTTCACTTGTACGAAATGCTTCTTCGAGAATCCGGCAAGTGTCTCAA
GAGCTCAAGCGATTGGCTTCCTTAAATAAGCGCCCAATTCCTACTGGAAGGTTCGACAGGAATAAATCAGCTGCTGCTCATGCTCTTAAA
GGTCTTAAGTTCATCAGCAAAACTGACGGCGGCGCTGGATGGGCCGCCGTCGAGAAGCGGTTCGATGAGATTACTGCTTCAACTACTGGC
TTGCTTCCTCGGGCCAAATTTGGAGAATGCATAGGTATGAATAAGGAGTCTAAGGAATTTGCTGGAGAGCTATATGATGCGCTTGCTCGA
AGGAGAAACATCACAACTGATTCCATTAACAAAGCACAACTCAAAGAGTTCTGGGACCAAGTTGCAGATCAAAGTTTTGATACTCGACTT
CAGACCTTCTTTGACATGGTTGATAAAGATGCAGATGGTAGAATCACAGAAGAAGAAGTCAGAGAGATTATCGGCCTTAGTGCGTCTGCC
AACAGGCTGTCAACTATCCAGAAACAATCTGATGAATACGCGGCAATGATCATGGAAGAGTTGGATCCTAATAACCTGGGATACATTATG
ATTGAGAACTTGGAAATGCTTTTACTGCAAGCACCAAATCAAACGGTGCAGAGAGGAGGCGAAAGCCGGAACTTGAGTCAGATGCTAAGT
CAGAAACTTAAGCACACACAAGAGCCAAATCCATTAGTGAGATGGTATAAGAGTTTTAAGTACTTTTTGCTGGATAGTTGGCAAAGAGTT
TGGGTATTGTTGTTGTGGATTGGAATCATGGCTGGTCTATTTACTTGGAAGTATATTCAGTATAAACAAAAAGCTGCATATGGTGTTATG
GGTCCCTGTGTGTGTCTTGCTAAGGGTGCTGCTGAGACAATCAAGCTCAACATGGCTATCATTTTACTCCCAGTTTGCAGAAACACAATT
ACCTGGCTTCGTAACAAGACCAGATTAGGTTCTGCAGTTCCTTTCGATGATAATCTCAATTTTCACAAAGTGATAGCAGTCGCGGTTGCA
CTTGGGGTTGCAATACACGGACTAGCTCATTTAACGTGTGATTTTCCTCGGCTTCTGAATGCTAGTGAAGAAGCATATGAACCAATGATA
TACTATTTTGGAGAACAGCCCGAAAGCTATTGGTGGTTTGTTAAGGGAGTTGAAGGGGTAACTGGAATTATAATGGTGATCCTAATGGCA
ATAGCTTTTACCCTAGCAACCCCATGGTTTAGAAGGGGCAGAGTCAGTTTCCCTAAACCATTTCACAAGCTCACTGGATTCAATGCCTTT
TGGTACTCACACCATCTGTTTATCATTGTCTACACTCTACTTATTGTCCATGGAGAAAAACTATACATAACCAAAACTTGGTACAAGAGA
ACGACATGGATGTACCTTACTGTCCCACTAGCACTCTATGCTGGTGAAAGGTTGCTTAGAGCATTCAGGTCAAGCATCAAAGCCGTTAAG
ATTTTGAAGGTGGCTGTGTATCCAGGAAATGTGTTGGCCCTTCACATGTCAAAACCACAAGGCTACAAATACAAAAGTGGGCAATACATG
TTTGTCAACTGTGCTGCGGTTTCACCATTTGAATGGCATCCATTTTCCATTACTTCGGCCCCAGGAGATGACTATCTCAGTGTCCATATT
AGAACTCTTGGTGATTGGACCAGACAACTTAAAACTGTTTTCTCCGAGGTTTGCCAGCCACCACCTAATGGGAAAAGTGGACTCCTTAGA
GCTGACTACTTGCAAGGAGAGAATAATCCTAATTTCCCAAGAGTGTTAATTGATGGACCATACGGAGCACCAGCACAAGACTACAAGCAG
TATGAGGTGGTTTTATTGGTGGGTCTTGGAATTGGAGCTACACCAATGATCAGTATCGTTAAAGACATTGTCAACAACATGAAGGCCATG
GACGAAGAAGAAAATTCCTTGGAAAATGGGCACGGGATGTCCAATGCAGCACAAAATGCTAGCCCAAATATGGCACAGAAGAGGGGTAAA
TCAGGTTCAGCAAGTGGAAGAAATAGCTTCAATACAAGGAGGGCATATTTCTATTGGGTCACAAGAGAACAAGGTTCATTTGACTGGTTC
AAAGGTATAATGAATGAAGCTGCTGAAATGGATCATAAGGGAGTAATTGAAATGCACAATTATTGTACAAGTGTTTATGAAGAAGGTGAT
GCTCGTTCTGCTCTTATTACTATGCTTCAGTCACTTCATCATGCCAAAAATGGTGTAGACATTGTTTCTGGCACGAGAGTTAAGTCACAC
TTTGCTAAGCCTAATTGGAGAAACGTCTACAAACGCATTGCTCTCAACCACCCAGAGGCTAAAGTTGGAGTGTTCTACTGTGGGGCACCG
GCACTAACGAAAGAGCTAAAACAACACGCATTGGATTTTTCACACAAGACATCCACCAAGTTTGATTTCCATAAAGAAAATTTTTGATCC
ATCAAAGAATTCCTCAAAACTGCCACGGACACTAAGTTGTTTTTCTAGAATCCACCACCTCTCTATTATGTACAGATAATGATGCACACC
AAGTTGATATATATTAATTGTGGTTGTAATATTAGTCTATTACAAAAAATAAGATTTTTTAAAAGTATATAGATAAGATGCTGAAGGAAT
TAAGAATGTTCTCTTGGAGAGGCAGGCAGAAGATAGTGGAGTTGAACCTGTTTTAATGGGTGCCACCCACCACTAAATTTGGATTTTACA
TTATAATTGCATAGAGGAAGGTGGTTGTCATCATTGTTTTTTGTTATTGTTTATTTTTTGTACTCTTTTACGTGGTGGAAGAGAGAGTCA
ACTAGTCACCTACTTAGTAATTATTGACCATGATTTGTGGAAGTTTAATAGTTTCCAGTAATAATTGTATACTAGGCCTTCTTGTATAAA
ACAGAGCTATACAGTTTGAATACCATAACTTGATTTCTATAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
wfi1	whitefly-induced gp91-phox

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	17
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	12
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 4 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P244319 (964 Aa)

LTFILKKKKFKFHSFISFFHEETIVAMQNSENHHPHHHHHHSDTEVIGNDRASYSGPLSGPLNKRGGKKSARFNIPESTDIGTSAGAGAK
SNDDAYVEITLDVREDSVAVHSVKTAGGADVEDPELALLAKGLEKKSTLGASLVRNASSRIRQVSQELKRLASLNKRPIPTGRFDRNKSA
AAHALKGLKFISKTDGGAGWAAVEKRFDEITASTTGLLPRAKFGECIGMNKESKEFAGELYDALARRRNITTDSINKAQLKEFWDQVADQ
SFDTRLQTFFDMVDKDADGRITEEEVREIIGLSASANRLSTIQKQSDEYAAMIMEELDPNNLGYIMIENLEMLLLQAPNQTVQRGGESRN
LSQMLSQKLKHTQEPNPLVRWYKSFKYFLLDSWQRVWVLLLWIGIMAGLFTWKYIQYKQKAAYGVMGPCVCLAKGAAETIKLNMAIILLP
VCRNTITWLRNKTRLGSAVPFDDNLNFHKVIAVAVALGVAIHGLAHLTCDFPRLLNASEEAYEPMIYYFGEQPESYWWFVKGVEGVTGII
MVILMAIAFTLATPWFRRGRVSFPKPFHKLTGFNAFWYSHHLFIIVYTLLIVHGEKLYITKTWYKRTTWMYLTVPLALYAGERLLRAFRS
SIKAVKILKVAVYPGNVLALHMSKPQGYKYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPPPNG
KSGLLRADYLQGENNPNFPRVLIDGPYGAPAQDYKQYEVVLLVGLGIGATPMISIVKDIVNNMKAMDEEENSLENGHGMSNAAQNASPNM
AQKRGKSGSASGRNSFNTRRAYFYWVTREQGSFDWFKGIMNEAAEMDHKGVIEMHNYCTSVYEEGDARSALITMLQSLHHAKNGVDIVSG
TRVKSHFAKPNWRNVYKRIALNHPEAKVGVFYCGAPALTKELKQHALDFSHKTSTKFDFHKENF

SignalP predicts non-secretion with a score of 0.161

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P117921 (938 Aa)

MQNSENHHPHHHHHHSDTEVIGNDRASYSGPLSGPLNKRGGKKSARFNIPESTDIGTSAGAGAKSNDDAYVEITLDVREDSVAVHSVKTA
GGADVEDPELALLAKGLEKKSTLGASLVRNASSRIRQVSQELKRLASLNKRPIPTGRFDRNKSAAAHALKGLKFISKTDGGAGWAAVEKR
FDEITASTTGLLPRAKFGECIGMNKESKEFAGELYDALARRRNITTDSINKAQLKEFWDQVADQSFDTRLQTFFDMVDKDADGRITEEEV
REIIGLSASANRLSTIQKQSDEYAAMIMEELDPNNLGYIMIENLEMLLLQAPNQTVQRGGESRNLSQMLSQKLKHTQEPNPLVRWYKSFK
YFLLDSWQRVWVLLLWIGIMAGLFTWKYIQYKQKAAYGVMGPCVCLAKGAAETIKLNMAIILLPVCRNTITWLRNKTRLGSAVPFDDNLN
FHKVIAVAVALGVAIHGLAHLTCDFPRLLNASEEAYEPMIYYFGEQPESYWWFVKGVEGVTGIIMVILMAIAFTLATPWFRRGRVSFPKP
FHKLTGFNAFWYSHHLFIIVYTLLIVHGEKLYITKTWYKRTTWMYLTVPLALYAGERLLRAFRSSIKAVKILKVAVYPGNVLALHMSKPQ
GYKYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPPPNGKSGLLRADYLQGENNPNFPRVLIDGP
YGAPAQDYKQYEVVLLVGLGIGATPMISIVKDIVNNMKAMDEEENSLENGHGMSNAAQNASPNMAQKRGKSGSASGRNSFNTRRAYFYWV
TREQGSFDWFKGIMNEAAEMDHKGVIEMHNYCTSVYEEGDARSALITMLQSLHHAKNGVDIVSGTRVKSHFAKPNWRNVYKRIALNHPEA
KVGVFYCGAPALTKELKQHALDFSHKTSTKFDFHKENF

SignalP predicts non-secretion with a score of 0.036

IPR000778 Cytochrome b-245, heavy chain
IPR013112 FAD-binding 8
IPR001093 IMP dehydrogenase/GMP reductase
IPR002048 Calcium-binding EF-hand
IPR013121 Ferric reductase, NAD binding
IPR002916 Ferric reductase-like transmembrane component

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101616	Ferric reductase-like transmembrane component N-terminal FAD-binding 8 Ferric reductase-like transmembrane component - Biological Process: electron transport (GO:0006118) - Cellular Component: membrane (GO:0016020) - Molecular Function: oxidoreductase activity (GO:0016491)	57
2	118797	NADPH oxidase Respiratory burst Ferric reductase-like transmembrane component - Biological Process: electron transport (GO:0006118) - Cellular Component: membrane (GO:0016020) - Molecular Function: oxidoreductase activity (GO:0016491) Cytochrome b-245 heavy chain - Biological Process: electron transport (GO:0006118) - Cellular Component: membrane (GO:0016020) - Molecular Function: oxidoreductase activity (GO:0016491) Ferric reductase-like transmembrane component N-terminal FAD-binding 8 EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	29
5	129233	NADPH oxidase Respiratory burst Ferric reductase-like transmembrane component - Biological Process: electron transport (GO:0006118) - Cellular Component: membrane (GO:0016020) - Molecular Function: oxidoreductase activity (GO:0016491) Cytochrome b-245 heavy chain - Biological Process: electron transport (GO:0006118) - Cellular Component: membrane (GO:0016020) - Molecular Function: oxidoreductase activity (GO:0016491) Ferric reductase-like transmembrane component N-terminal FAD-binding 8 EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	29

Preceding Unigenes (2)

Unigene	Build
SGN-U214217	Lycopersicon Combined #3
SGN-U230171	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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