Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574588 in the current build, Tomato 200607 #2

Unigene SGN-U315079

Unigene Basic Information

Unigene ID:	SGN-U315079
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315079
mRNA sequence:	Length: 1540 bp

>SGN-U315079 Tomato 200607 #1 (37 members)
TCTCAATCTGCGAAAATGGCGTTTCAGAAAATCATTGTTCAAAACCCCATCGTTGAGATGGATGGAGATGAAATGACTCGAGTTATTTGG
AAATCTATCAAGGATAAGCTCATCCTTCCCTTCCTGGAATTGGACATCAAATACTTTGACCTTGGTCTTCCCCACCGTGATGCCACAGAT
GATAAGGTTACAATTGAAAGTGCGGAAGCCACTCAGAAGTACAACGTAGCTATTAAGTGTGCAACCATCACCCCAGATGAGGCACGTGTA
AAGGAGTTTAACTTGAAATCCATGTGGAGGAGCCCTAATGGGACAATCAGAAACATCCTAAATGGAACTGTCTTTAGAGAACCAATTATG
TGCAAAAATATCCCCAGACTTGTCCCAGGTTGGACCAAACCAATTTGCATTGGTAGACATGCTTTTGGAGATCAATACCGAGCTACTGAT
ACTGTTATTAAAGGAGCTGGAAAACTCAAATTGGTGTTTGTGCCAGAAGGATCAGACGAGAAGACAGAATTTGAAGTTTACAACTTTACT
GGTGCTGGTGGAGTAGCTTTATCCATGTACAACACAGACGAGTCTGTTCGCGCATTTGCTGAGGCTTCAATGAACATGGCATTCCAAAAG
AAATGGCCGCTCTATCTTAGTACAAAGAATACCATTCTTAAGAAATATGATGGGAGGTTCAAGGACATCTTCCAAGAAGTTTATGAAGCA
AATTGGAAGTCCAAGTACGAGGAAGCTGGAATCTGGTACGAACACCGTCTTATCGACGATATGGTTGCTTATGCTTTAAAGAGTGAAGGT
GGTTATGTATGGGCCTGCAAGAACTATGATGGTGATGTACAGAGTGATTTCTTAGCACAAGGTTTTGGATCCCTTGGGTTGATGACCTCT
GTCCTGGTGTGTCCTGATGGCAAGACCATTGAGGCTGAAGCAGCCCATGGAACTGTTACCCGCCACTACAGGGTTCACCAGAAAGGAGGT
GAAACCAGCACAAACAGCATTGCCTCCATCTTTGCCTGGACTCGTGGCCTTGCACACAGGGCAACATTGGACAACAACGAACGGCTCTTG
GATTTTACTGAGAAACTAGAGGCAGCATGCATTGGTGCAGTGGAATCTGGAAAGATGACGAAAGATCTTGCACTCATCATCCATGGATCC
AAGCTTTCACGAGAGCATTATCTGAACACGGAAGAGTTCATTGACGCTGTAGCTGATGAGCTCAAAGCAAAACTTCTGAAAGCAAAGGCC
TAAATGTATGAGTGAGGACAAGTCAGTTTGAGGCTATTGAATTGAAGAGAAATAAAAGGAGTTGAGGCCTTGTTTGGTATACTAAATTTC
AAGAGGTTTTTATCCTTTTTAGGTTGAGGATTATTCTCCAGACACTACATTTTGAACCATTTGAATCTGAATTTCTATTGCTGATGTTGC
TGCAAGTTATTTGCCAATTTATAGTTTTACACATAGTTTGTTGTTGCCTTTTAATATCAATTTGCTTGAGAAAAAAAACATCTTTATTTA
AAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOS	suspension cultures	8026	7
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102497	Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Isocitrate dehydrogenase NADP-dependent eukaryotic - Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450) - Biological Process: main pathways of carbohydrate metabolism (GO:0006092)	13
2	119669	Isocitrate dehydrogenase NADP-dependent eukaryotic - Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450) - Biological Process: main pathways of carbohydrate metabolism (GO:0006092) Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	13
5	130005	Isocitrate dehydrogenase NADP-dependent eukaryotic - Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450) - Biological Process: main pathways of carbohydrate metabolism (GO:0006092) Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U214182	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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