Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574051 in the current build, Tomato 200607 #2

Unigene SGN-U315026

Unigene Basic Information

Unigene ID:	SGN-U315026
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315026
mRNA sequence:	Length: 2071 bp

>SGN-U315026 Tomato 200607 #1 (31 members)
TTCTCTCTCTCACTTTCTCTCTCTACCTCAGCTTAAGACATTGAAGAAGACGAAGAACAGCAGCCAAGCAGAAGAATTCTCATATCTATT
TGCTTTGTATTTTTCTCTGTTTAATGGATCCATTCAATTATGTTTCGTCCATAATCGAGCTTCGTAAAGGGTTTGGGTGATATTGACTGC
ATAGTTGCGCCATCTTATAATTAGAAGTTTCATGATGTATGTAGACACCCTTTTTTCTTAACCAACTAGAAACAAAACAAAGGAAAAATA
ATAACGAAGAAAAAAGAATGAGCTTATCAGGAAAAGGGACTCCAACCAGTGACAAAAAGCTAACCTTAGCAAAAGCGACAAGCTTGAATC
CAAATGCCGCAGAATTTGTACCCTTTGCACTCAGATCACCCTCAGGTAGCACTAGCAGCACCGATGCATCAAAGTTCGCTAACTCCACTA
CTACTCTTGGAAAAGCTGTACTAGATAGATCAGAATCATCTGCTTCGAACAACTCAGATGATGAAGCACACCAGTATTGGCGTCGCCAGC
TCCCGGATGATATTACACCGGACTTTAATGTCATGGGAGAAGATGATTCTCATGGAATCAGCAGTCTTCCATTTTCTAGATTATCAGTAA
CTGATGTCAATGAAGCTTCAATATTCCCTGCCTCAACTGGCAGTGGCTTCATGTTGAAGGACCAGCTGGAGTTATCTCCTAATCGCATTA
ATGGTACTAGTTTTGTTGAAAAGACAGGATATCCTATTACATCTTTTGGCGAAGATGCATCCTCAACTAGTTTTCATCTGCCTTCTAAAC
CCTGGGACAAGCCATCGCTGACTAGTGACCAGCCCTTTGCCAATATTAGGGAGGGGCCTCATTATAACGGGAATTCAGGAAACAGCTTCT
TTGGAGACATGATGAACGAGCAACCATTTTTTGAAGCAGATGTAAACCCTCTTGAATTTTTAGCCTCTCAATTTCCTGGTTTTGCTGCTG
AAAGTCTTGGAGAGGTGTACTATGCCAATGGAGGTGACTTGAATCTGACAATTGAAATGCTTACTCAGCTTGAGCTTCAAGTTGATGGTG
GGTTTAATCAAAATCTGAATTCAAAAGCCTTGTCGGCTCCAAATCTTAGTGCTCTGGATTTCCCTGCTCTTTCTGTGGCAGAAAGTCAAA
ACAGCAGCCTAAAGTACTCTGGCAGTGATGCTCAACAAAATGTCAATCCCTATAGGCCTTCTGAAAAAGAGAGCACCCTTCTTTTTAGAT
CTGGCTCTTCCATCCCTTTTCGAGGTGCTACAGATTTTGCATCTGCTGTCAGGAAGATGGCATCTCAGGATTCTAGCATATGGAAGTATG
ATAGGACTGGAGTAGCTGATGGTAGTGTTGGATCAAGTAGAAATTCACCTGTATTGGCTAGCTCTTACAATGGTGGACAGAGTAGGGGAG
TTTATGGTGATAGGTTGCAGAGCCGAGGTTCCACACGTGCAGCTCCTGTCTGGCTTGAAACTGGAGAAGCAGTTGCAAATATATATTCTG
AAATGCGGGAAGAGGCTCGTGACCATGCACGCTTGCGTAATGCATACTTTGAACAGGCACGTCAGGCATATCTTATTGGTAACAAGGCTT
TGGCCAAAGAACTGAGCGTCAAGGGACAACTTCACAATATGCAGATGAAGGCAGCTCATGGGAAGGCTCAAGAATCTATATATCGCCTAA
GGAACCCAGAGATGCAGGGAAATGGAAGAGGACAAGAGAGAATCATAGATCTGCATGGTCTTCATGTTACTGAAGCGATTCATGTCCTGA
AGCGTGAGCTGTCTGTGTTGAGGAATGCTGCCAGATCAGCAGAGCAGCGAATACAGGTTTATATTTGCGTTGGAACAGGACATCATACAA
AGGGTTCGCGTACTCCTGCCAGGCTTCCCATTTCTGTCCAGCGTTACCTTCTAGAGGAGGGCCTTGACTACTCTGAGCCACAACCAGGGC
TTCTCCGAGTTGTGGTATACTGAGGTGTGAAGGTATAGGAGTTTTTGACACGTCATTATCCTAGAAAATCCATCAGATGAAGAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101736	UBA-like	42
2	120390	Smr protein/MutS2 C-terminal	9
5	130948	Smr protein/MutS2 C-terminal	8

Preceding Unigenes (1)

Unigene	Build
SGN-U214336	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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