Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U584535 in the current build, Tomato 200607 #2

Unigene SGN-U315014

Unigene Basic Information

Unigene ID:	SGN-U315014
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315014
mRNA sequence:	Length: 1751 bp

>SGN-U315014 Tomato 200607 #1 (2 members)
GTAATACACTCTAGTCTAATACCTCCGACGAGTTTGCCGGAATATGAGTCGCTACGATAGCCGTCCGGCGGACCCTGGCTCTTACCGTGA
CCGTCGCAGTGATTCAGGCTTCGGTGGGGGCTCAAATTATAGGTCATCATCATCGAGCAGGAGAGATTCCGAGGGTAAGGAGTCGCCACG
GAAGGTTAATTTGGATGATTTGCCTCCATTTGAGAAGAATTTCTATGTTGAATCACCATCCATAGCAGCAATGACTGAAGGTGAGGTGGA
AGAGTATAGACGACGACGGGAGATCACTATTGAGGGCCGTGATGTGCCCAAGCCTATAAAGTCCTTTCATGACGTAGGATTTCCAGATTA
TGTCTTGCAAGAAATCGAAAAAGCTGGCTTCACTGAACCTACACCTATTCAAGCTCAAGGTTGGCCTATGGCCTTGAAGGGTCGTGATCT
CATTGGCATAGCAGAAACAGGGTCTGGGAAGACAATTGCTTATCTATTGCCTGCAATTGTGCACGTTAATGCCCAGCCCATTTTAGATCA
TGGAGATGGTCCAATTGTCTTAGTGTTAGCCCCAACTCGTGAACTTGCTGTTCAGATTCAACAAGAAGCTACTAAGTTTGGTGCATCATC
GCGGATTAAGAATACCTGCATTTATGGTGGGGTTCCAAAGGGGCCCCAAGTTCGTGATCTTCAGAAAGGTGTTGAAATTGTTATTGCCAC
ACCTGGAAGGTTGATTGATATGTTAGAATCTAATCATACAAATCTTCGAAGAGTGACATATCTCGTGCTGGATGAGGCTGACCGCATGCT
AGACATGGGTTTTGAACCTCAGATCCGCAAAATTGTATCTCAGATACGCCCAGATCGTCAAACGCTGTATTGGAGTGCCACATGGCCCAA
AGAAGTTGAGCAGCTTGCAAGACAATTCCTTTTCAATGCATACAAAGTAATTATTGGTTCAGCTGACCTGAAAGCTAATCACGCTATTCG
TCAGCATGTGGAAATCGTCTCGGAGAGCCAGAAGTATAATAAATTAGTAAAGTTGCTGGAAGATATTATGGATGGTAGTCGGATTTTAAT
ATTCATGGACACTAAAAAGGGGTGTGACCAAGTAACTCGGCAGCTCCGGATGGATGGTTGGCCGGCACTTTCTATTCATGGTGATAAGAG
TCAAGCAGAAAGAGATTGGGTCCTTTCAGAATTCAAAGCTGGAAAGTCTCCTATAATGACAGCTACAGACGTTGCTGCTCGAGGTCTAGA
TGTGAAGGATGTAAAGTTTGTAATCAACTATGATTTTCCTGGATCATTGGAGGACTATGTTCACCGAATTGGTAGAACGGGAAGAGCTGG
TGCCTCAGGGACAGCATACACATTCTTTACTGCAGCGAATGCTAGGTTTGCGAAGGACCTTGTTAACATTCTTGAGGAGGCTGGACAGAA
AGTCAGTCCTGAATTGGCAAAAATGGGACGTGGTGCTCCTCCCCCTCCTGGTCACGGAGGGTTTCGAGACCGTGGAAGGGGTTATGGAGG
CAATAAGCAGTGGAGCTAGAAAAGACTGGTGGGTACTACCGAAAGGCACAAAAGCTAGTAATTTTGCCCCAGCCGATGAAAATCTAATTA
CACATTTTATAGCAATGAGATCATGACCCTATTTATGTTGCATGTATAATATGTTTGGATTATTTCAGTAGAAGGTGAAAAAGTTAACAA
TCTTTATTTAGTATTGCTTTCTTTTTTTTGTTACTCTAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
er68	ethylene-responsive RNA helicase	RNA helicase

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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